Mercurial > repos > nml > wade

annotate wade.xml @ 0:92e72350a3c5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
author nml
date Fri, 29 Nov 2019 14:57:47 -0500
parents
children 631e8eb3371e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
1 <tool id="wade" name="Wade" version="0.2.4+galaxy0">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
2 <description>identify regions of interest</description>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
3 <requirements>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
4 <requirement type="package" version="0.2.4">wade</requirement>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
5 </requirements>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
6 <command detect_errors="exit_code"><![CDATA[
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
7
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
8 #for $i in $input#
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
9 cp '$i' '$i.element_identifier' &&
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
10 #end for
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
11
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
12 #set $samples = ','.join([$i.element_identifier for $i in ( $input )])
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
13
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
14 Rscript --vanilla -e 'library(wade); source(file = system.file("exec/wade_cmd.R", package = "wade"))'
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
15
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
16 -d 'output'
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
17 -o '$mode.type'
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
18 -t '$mode.subtype'
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
19
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
20 -s '$samples'
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
21
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
22 ]]></command>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
23 <inputs>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
24 <param name="input"
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
25 type="data" format="fasta"
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
26 optional="false"
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
27 multiple="true"
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
28 label="Contig Fasta file(s)"/>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
29 <conditional name="mode">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
30 <param name="type" type="select" label="Analysis Group">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
31 <option value="GAS">GAS</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
32 <option value="GONO">GONO</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
33 <option value="PNEUMO">PNEUMO</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
34 </param>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
35 <when value="GAS">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
36 <param name="subtype" type="select" label="Select specific analysis">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
37 <option value="AMR">ARG-ANNOT/Resfinder/CARD</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
38 <option value="EMM">EMM Typing</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
39 <option value="MLST">MLST Type</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
40 <option value="VFDB">VFDB (Virulence Factor Database)</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
41 <option value="MASTER">Master blaster</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
42 </param>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
43 </when>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
44 <when value="GONO">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
45 <param name="subtype" type="select" label="Select specific analysis">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
46 <option value="MLST">MLST Type</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
47 <option value="NGMAST">NG-MAST Type</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
48 <option value="NGSTAR">NG-STAR Type</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
49 <option value="rRNA23S">23S rRNA Alleles</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
50 <option value="MASTER">Master blaster</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
51 </param>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
52 </when>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
53 <when value="PNEUMO">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
54 <param name="subtype" type="select" label="Select specific analysis">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
55 <option value="AMR">ARG-ANNOT/Resfinder/CARD</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
56 <option value="MLST">MLST Type</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
57 <option value="VFDB">VFDB (Virulence Factor Database)</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
58 <option value="rRNA23S">23S rRNA Alleles</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
59 <option value="MASTER">Master blaster</option>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
60 </param>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
61 </when>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
62 </conditional>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
63 </inputs>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
64 <outputs>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
65 <data name="report" format="csv">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
66 <discover_datasets pattern="__designation_and_ext__" directory="output" visible="true" />
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
67 </data>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
68 </outputs>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
69 <tests>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
70 <test>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
71 <param name="input" value="SC19-2806-A.fasta"/>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
72 <output name='report'>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
73 <discovered_dataset designation="GAS_dbpipeline_WADE">
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
74 <assert_contents>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
75 <has_text text="SampleNo" />
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
76 </assert_contents>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
77 </discovered_dataset>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
78 </output>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
79 </test>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
80 </tests>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
81 <help><![CDATA[
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
82 ==============
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
83 Wade
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
84 ==============
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
85
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
86 R Script to generate results
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
87
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
88 =====
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
89 Legal
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
90 =====
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
91
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
92 Copyright Government of Canada 2019
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
93
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
94 Written by: National Microbiology Laboratory, Public Health Agency of Canada
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
95
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
96 Licensed under the Apache License, Version 2.0 (the "License"); you may not use
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
97 this work except in compliance with the License. You may obtain a copy of the
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
98 License at:
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
99
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
100 http://www.apache.org/licenses/LICENSE-2.0
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
101
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
102 Unless required by applicable law or agreed to in writing, software distributed
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
103 under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
104 CONDITIONS OF ANY KIND, either express or implied. See the License for the
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
105 specific language governing permissions and limitations under the License.
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
106
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
107 =======
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
108 Contact
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
109 =======
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
110
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
111 **Gary van Domselaar**: gary.vandomselaar@canada.ca
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
112
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
113 ]]></help>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
114 <citations>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
115 <citation type="bibtex">@ARTICLE{a1,
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
116 title = {R Script to generate results.},
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
117 author = {Adrian Zetner},
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
118 url = {https://github.com/phac-nml/wade}
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
119 }
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
120 }</citation>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
121 </citations>
92e72350a3c5 "planemo upload for repository https://github.com/phac-nml/wade commit b3536a15ff4e6295722ec4794ea5b840b5d19276"
nml
parents:
diff changeset
122 </tool>