Mercurial > repos > nml > wade
changeset 3:31483f5b6240 draft default tip
"planemo upload for repository https://github.com/phac-nml/wade commit b9586845e0a5e3d53dcfd68459e9b5282bb66549"
author | nml |
---|---|
date | Tue, 17 Dec 2019 13:21:08 -0500 |
parents | d1ef975c69f2 |
children | |
files | wade.xml |
diffstat | 1 files changed, 8 insertions(+), 11 deletions(-) [+] |
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--- a/wade.xml Thu Dec 05 11:34:17 2019 -0500 +++ b/wade.xml Tue Dec 17 13:21:08 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="wade" name="Wade" version="0.2.5+galaxy0"> +<tool id="wade" name="Wade" version="0.2.5+galaxy1"> <description>identify regions of interest</description> <requirements> <requirement type="package" version="0.2.5">wade</requirement> @@ -41,22 +41,19 @@ <inputs> <conditional name="mode"> <param name="type" type="select" label="Analysis Group"> - <option value="GAS">GAS</option> - <option value="GONO">GONO</option> - <option value="PNEUMO">PNEUMO</option> + <option value="GAS">Streptococcus pyogenes</option> + <option value="GONO">Streptococcus pneumoniae</option> + <option value="PNEUMO">Neisseria gonorrhoeae</option> </param> <when value="GAS"> - - <param name="input" type="data" format="fasta" multiple="true" label="Contig Fasta file(s)"/> - <param name="subtype" type="select" label="Select specific analysis"> <option value="AMR">ARG-ANNOT/Resfinder/CARD</option> <option value="EMM">EMM Typing</option> <option value="MLST">MLST Type</option> <option value="VFDB">VFDB (Virulence Factor Database)</option> - <option value="MASTER">Master blaster</option> + <option value="MASTER">AMR/Toxin/Virulence Profiler</option> </param> - + <param name="input" type="data" format="fasta" multiple="true" label="Contig Fasta file(s)"/> </when> <when value="GONO"> @@ -66,7 +63,7 @@ <option value="NGMAST">NG-MAST Type</option> <option value="NGSTAR">NG-STAR Type</option> <option value="rRNA23S">23S rRNA Alleles</option> - <option value="MASTER">Master blaster</option> + <option value="MASTER">AMR/NG-STAR Profiler</option> </param> <when value="rRNA23S"> <param name="input" type="data" format="vcf" multiple="true" label="VCF file(s)"/> @@ -94,7 +91,7 @@ <option value="MLST">MLST Type</option> <option value="VFDB">VFDB (Virulence Factor Database)</option> <option value="rRNA23S">23S rRNA Alleles</option> - <option value="MASTER">Master blaster</option> + <option value="MASTER">AMR/Virulence Profiler</option> </param> <when value="rRNA23S"> <param name="input" type="data" format="vcf" multiple="true" label="VCF file(s)"/>