Mercurial > repos > ntino-krampis > viralcloud
diff viral_assembly_annotation/VIGOR.xml @ 0:beaf42837914 draft
viral cloud resource galaxy tool definitions initial commit
| author | ntino-krampis |
|---|---|
| date | Thu, 31 Jan 2013 13:41:35 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/viral_assembly_annotation/VIGOR.xml Thu Jan 31 13:41:35 2013 -0500 @@ -0,0 +1,24 @@ +<tool id="VIGOR" name="VIGOR" version="1.0.0"> + <description>Run VIGOR</description> + <command interpreter="python"> + VIGOR.py $input $outputALN $outputCDS $outputFS $outputPEP $outputRPT $outputSTATS $outputTBL + </command> + <inputs> + <param name="input" label="Input FASTA" type="data" format="fasta" /> + </inputs> + <outputs> + <data format="txt" name="outputALN" label="ALN from ${tool.name} on ${on_string}" /> + <data format="fasta" name="outputCDS" label="CDS from ${tool.name} on ${on_string}" /> + <data format="txt" name="outputFS" label="FS from ${tool.name} on ${on_string}" /> + <data format="fasta" name="outputPEP" label="PEP from ${tool.name} on ${on_string}" /> + <data format="txt" name="outputRPT" label="RPT from ${tool.name} on ${on_string}" /> + <data format="txt" name="outputSTATS" label="STATS from ${tool.name} on ${on_string}" /> + <data format="txt" name="outputTBL" label="TBL from ${tool.name} on ${on_string}" /> + </outputs> + + <help> +**What it does** + +This tool runs VIGOR on the input set of fasta sequences. + </help> +</tool>