Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/C.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/C.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,3100 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Bacillariophyta_58S_end_eight_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 11:42:32 2012 +NSEQ 5 +EFFN 3.325195 +CKSUM 993487011 +STATS LOCAL MSV -8.1073 0.71931 +STATS LOCAL VITERBI -7.7843 0.71931 +STATS LOCAL FORWARD -3.8720 0.71931 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.47720 1.44778 1.45140 1.19603 + 1.38629 1.38629 1.38629 1.38629 + 0.03687 4.01190 4.01190 1.46634 0.26236 0.00000 * + 1 2.94809 3.58857 0.11707 3.49333 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 + 2 3.43404 0.13010 3.48346 2.82967 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 + 3 2.94809 3.58857 0.11707 3.49333 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03687 4.01190 4.01190 1.46634 0.26236 1.09861 0.40547 + 4 3.43404 0.13010 3.48346 2.82967 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 44 2.57915 2.25909 2.64442 0.28946 44 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 2.53331 3.02441 0.20344 2.88069 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Bacillariophyta_58S_end_five_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 11:42:02 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 890636672 +STATS LOCAL MSV -7.3435 0.72851 +STATS LOCAL VITERBI -8.2240 0.72851 +STATS LOCAL FORWARD -3.2698 0.72851 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.70415 1.39193 1.19561 1.32067 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.57915 2.25909 2.64442 0.28946 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.53331 3.02441 0.20344 2.88069 2 - 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