Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/E.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/E.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,2170 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Euglenozoa_58S_end_five_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 21:20:25 2012 +NSEQ 5 +EFFN 3.305664 +CKSUM 1011588078 +STATS LOCAL MSV -8.1772 0.71930 +STATS LOCAL VITERBI -7.8656 0.71930 +STATS LOCAL FORWARD -3.6513 0.71930 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.83104 0.97779 1.32465 1.62094 + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 0.00000 * + 1 3.42681 0.13096 3.47654 2.82441 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 2 3.42681 0.13096 3.47654 2.82441 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 3 3.42681 0.13096 3.47654 2.82441 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 4 3.42681 0.13096 3.47654 2.82441 4 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 5 2.43822 1.17704 2.50879 0.64793 5 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 6 3.42681 0.13096 3.47654 2.82441 6 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 7 2.94371 3.58221 0.11777 3.48630 7 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 8 2.94371 3.58221 0.11777 3.48630 8 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 9 2.94371 3.58221 0.11777 3.48630 9 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 10 2.94371 3.58221 0.11777 3.48630 10 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 11 2.66304 1.70497 2.72642 0.38121 11 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 12 3.42681 0.13096 3.47654 2.82441 12 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 + 45 3.42681 0.13096 3.47654 2.82441 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01867 3.99003 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Euglenozoa_58S_end_four_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 21:20:17 2012 +NSEQ 9 +EFFN 3.388184 +CKSUM 4129927598 +STATS LOCAL MSV -7.5680 0.71933 +STATS LOCAL VITERBI -7.9086 0.71933 +STATS LOCAL FORWARD -4.1297 0.71933 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.73272 1.05373 1.47466 1.40362 + 1.38629 1.38629 1.38629 1.38629 + 0.03645 4.02324 4.02324 1.46634 0.26236 0.00000 * + 1 3.45700 0.12739 3.50544 2.84636 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 + 2 3.45700 0.12739 3.50544 2.84636 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 + 3 3.10960 2.60848 3.15695 0.17533 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 + 4 3.10960 2.60848 3.15695 0.17533 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03645 4.02324 4.02324 1.46634 0.26236 1.09861 0.40547 + 45 3.45700 0.12739 3.50544 2.84636 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01839 4.00518 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Euglenozoa_58S_end_one_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Fri Jan 20 21:19:53 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 4096091460 +STATS LOCAL MSV -7.5109 0.72875 +STATS LOCAL VITERBI -8.2829 0.72875 +STATS LOCAL FORWARD -3.4193 0.72875 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.64469 1.08655 1.50951 1.39220 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.81865 0.23582 2.88868 2.35662 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.81865 0.23582 2.88868 2.35662 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.81865 0.23582 2.88868 2.35662 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 2.57915 2.25909 2.64442 0.28946 4 - 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