Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/H.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/H.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,3720 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Rhodophyta_58S_end_four_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Wed Jan 25 21:56:19 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 3310020795 +STATS LOCAL MSV -7.3962 0.72785 +STATS LOCAL VITERBI -8.3431 0.72785 +STATS LOCAL FORWARD -3.4147 0.72785 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.39505 1.59495 1.20617 1.38662 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.53331 3.02441 0.20344 2.88069 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.81865 0.23582 2.88868 2.35662 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.53331 3.02441 0.20344 2.88069 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 2.81865 0.23582 2.88868 2.35662 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 0.23862 2.84929 2.43386 2.70756 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Rhodophyta_58S_end_one_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Wed Jan 25 21:55:52 2012 +NSEQ 4 +EFFN 3.332031 +CKSUM 3304563817 +STATS LOCAL MSV -8.0466 0.71932 +STATS LOCAL VITERBI -7.7427 0.71932 +STATS LOCAL FORWARD -4.1192 0.71932 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.92744 1.42765 1.08593 1.28366 + 1.38629 1.38629 1.38629 1.38629 + 0.03682 4.01314 4.01314 1.46634 0.26236 0.00000 * + 1 2.94961 3.59079 0.11683 3.49577 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 + 2 3.43655 0.12980 3.48587 2.83150 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 + 3 2.94961 3.59079 0.11683 3.49577 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 + 4 3.43655 0.12980 3.48587 2.83150 4 - 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