Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/U.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/U.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,620 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Eustigmatophyceae_58S_end_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Sun Sep 25 01:39:32 2011 +NSEQ 6 +EFFN 3.336914 +CKSUM 3393550359 +STATS LOCAL MSV -8.0163 0.71932 +STATS LOCAL VITERBI -7.6944 0.71932 +STATS LOCAL FORWARD -4.0151 0.71932 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.93226 1.59605 1.19721 1.04854 + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01402 4.01402 1.46634 0.26236 0.00000 * + 1 3.43835 0.12958 3.48758 2.83281 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 + 2 2.95070 3.59237 0.11666 3.49752 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 + 3 3.43835 0.12958 3.48758 2.83281 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 + 4 3.09320 2.59806 3.14118 0.17794 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03679 4.01402 4.01402 1.46634 0.26236 1.09861 0.40547 + 45 3.09320 2.59806 3.14118 0.17794 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01856 3.99580 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 2_5.8_Eustigmatophyceae_58S_start_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Sun Sep 25 01:34:03 2011 +NSEQ 6 +EFFN 3.213867 +CKSUM 1922503689 +STATS LOCAL MSV -8.1335 0.71933 +STATS LOCAL VITERBI -7.6652 0.71933 +STATS LOCAL FORWARD -4.1546 0.71933 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.22065 1.26567 1.52763 1.58055 + 1.38629 1.38629 1.38629 1.38629 + 0.03764 3.99155 3.99155 1.46634 0.26236 0.00000 * + 1 3.39218 0.13520 3.44336 2.79911 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 + 2 0.14667 3.34479 2.77882 3.24311 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 + 3 0.14667 3.34479 2.77882 3.24311 3 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 + 44 0.14667 3.34479 2.77882 3.24311 44 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03764 3.99155 3.99155 1.46634 0.26236 1.09861 0.40547 + 45 3.39218 0.13520 3.44336 2.79911 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.01900 3.97290 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 4_LSU_Eustigmatophyceae_4_LSU_start_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Sun Sep 25 01:43:21 2011 +NSEQ 5 +EFFN 3.315430 +CKSUM 2420342418 +STATS LOCAL MSV -8.0313 0.71931 +STATS LOCAL VITERBI -7.5738 0.71931 +STATS LOCAL FORWARD -3.9568 0.71931 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.23266 1.26091 1.60118 1.49866 + 1.38629 1.38629 1.38629 1.38629 + 0.03694 4.01013 4.01013 1.46634 0.26236 0.00000 * + 1 3.08626 2.59365 3.13451 0.17906 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.03694 4.01013 4.01013 1.46634 0.26236 1.09861 0.40547 + 2 3.08626 2.59365 3.13451 0.17906 2 - 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