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view ITSx_db/HMMs/H.hmm @ 0:f82c70f54bd7 draft
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| author | okorol |
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| date | Tue, 24 Mar 2015 12:02:48 -0400 |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Rhodophyta_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:56:19 2012 NSEQ 2 EFFN 2.000000 CKSUM 3310020795 STATS LOCAL MSV -7.3962 0.72785 STATS LOCAL VITERBI -8.3431 0.72785 STATS LOCAL FORWARD -3.4147 0.72785 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39505 1.59495 1.20617 1.38662 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.53331 3.02441 0.20344 2.88069 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhodophyta_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:55:52 2012 NSEQ 4 EFFN 3.332031 CKSUM 3304563817 STATS LOCAL MSV -8.0466 0.71932 STATS LOCAL VITERBI -7.7427 0.71932 STATS LOCAL FORWARD -4.1192 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92744 1.42765 1.08593 1.28366 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 0.00000 * 1 2.94961 3.59079 0.11683 3.49577 1 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 2 3.43655 0.12980 3.48587 2.83150 2 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 3 2.94961 3.59079 0.11683 3.49577 3 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 4 3.43655 0.12980 3.48587 2.83150 4 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 5 3.09163 2.59706 3.13967 0.17819 5 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 6 3.43655 0.12980 3.48587 2.83150 6 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 7 2.94961 3.59079 0.11683 3.49577 7 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 8 3.43655 0.12980 3.48587 2.83150 8 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 9 2.94961 3.59079 0.11683 3.49577 9 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 10 2.94961 3.59079 0.11683 3.49577 10 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 11 2.94961 3.59079 0.11683 3.49577 11 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 12 3.09163 2.59706 3.13967 0.17819 12 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 13 0.14150 3.38325 2.80387 3.28520 13 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 14 0.14150 3.38325 2.80387 3.28520 14 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 15 3.09163 2.59706 3.13967 0.17819 15 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 16 3.43655 0.12980 3.48587 2.83150 16 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 17 3.43655 0.12980 3.48587 2.83150 17 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 18 3.09163 2.59706 3.13967 0.17819 18 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 19 2.94961 3.59079 0.11683 3.49577 19 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 20 3.43655 0.12980 3.48587 2.83150 20 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 21 2.94961 3.59079 0.11683 3.49577 21 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 22 0.14150 3.38325 2.80387 3.28520 22 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 23 2.94961 3.59079 0.11683 3.49577 23 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 24 3.43655 0.12980 3.48587 2.83150 24 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 25 0.14150 3.38325 2.80387 3.28520 25 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 26 2.94961 3.59079 0.11683 3.49577 26 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 27 2.94961 3.59079 0.11683 3.49577 27 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 28 3.09163 2.59706 3.13967 0.17819 28 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 29 3.43655 0.12980 3.48587 2.83150 29 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 30 3.09163 2.59706 3.13967 0.17819 30 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 31 2.94961 3.59079 0.11683 3.49577 31 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 32 3.09163 2.59706 3.13967 0.17819 32 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 33 3.09163 2.59706 3.13967 0.17819 33 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 34 3.09163 2.59706 3.13967 0.17819 34 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 35 2.94961 3.59079 0.11683 3.49577 35 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 36 0.14150 3.38325 2.80387 3.28520 36 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 37 2.94961 3.59079 0.11683 3.49577 37 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 38 3.09163 2.59706 3.13967 0.17819 38 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 39 2.94961 3.59079 0.11683 3.49577 39 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 40 3.09163 2.59706 3.13967 0.17819 40 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 41 3.43655 0.12980 3.48587 2.83150 41 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 42 3.09163 2.59706 3.13967 0.17819 42 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 43 2.94961 3.59079 0.11683 3.49577 43 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 44 3.09163 2.59706 3.13967 0.17819 44 - - 1.38629 1.38629 1.38629 1.38629 0.03682 4.01314 4.01314 1.46634 0.26236 1.09861 0.40547 45 2.40704 0.95719 2.47912 0.81615 45 - - 1.38629 1.38629 1.38629 1.38629 0.01858 3.99490 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhodophyta_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:56:09 2012 NSEQ 3 EFFN 3.000000 CKSUM 86740024 STATS LOCAL MSV -7.8986 0.72037 STATS LOCAL VITERBI -7.8442 0.72037 STATS LOCAL FORWARD -4.0185 0.72037 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71607 1.38208 1.25621 1.25722 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.15719 3.27118 2.73043 3.16274 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 3.30705 0.14631 3.36166 2.73626 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhodophyta_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:56:01 2012 NSEQ 34 EFFN 3.407471 CKSUM 2094048478 STATS LOCAL MSV -7.3795 0.71932 STATS LOCAL VITERBI -7.7183 0.71932 STATS LOCAL FORWARD -4.1784 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81952 1.29666 1.13881 1.40956 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 0.00000 * 1 2.96611 3.61484 0.11424 3.52234 1 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 2 3.00826 0.25008 3.07015 2.07568 2 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 3 2.96611 3.61484 0.11424 3.52234 3 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 4 3.46393 0.12659 3.51207 2.85138 4 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 5 3.11571 2.61236 3.16282 0.17437 5 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 6 3.46393 0.12659 3.51207 2.85138 6 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 7 2.67126 3.47362 0.14439 3.37328 7 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 8 3.06101 0.23141 3.12147 2.15715 8 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 9 2.96611 3.61484 0.11424 3.52234 9 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 10 2.96611 3.61484 0.11424 3.52234 10 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 11 2.96611 3.61484 0.11424 3.52234 11 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 12 2.64465 0.44934 2.71441 1.49311 12 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 13 0.13841 3.40703 2.81928 3.31124 13 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 14 0.13841 3.40703 2.81928 3.31124 14 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 15 3.11571 2.61236 3.16282 0.17437 15 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 16 3.46393 0.12659 3.51207 2.85138 16 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 17 3.46393 0.12659 3.51207 2.85138 17 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 18 3.11571 2.61236 3.16282 0.17437 18 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 19 2.96611 3.61484 0.11424 3.52234 19 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 20 3.46393 0.12659 3.51207 2.85138 20 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 21 2.96611 3.61484 0.11424 3.52234 21 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 22 0.13841 3.40703 2.81928 3.31124 22 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 23 2.96611 3.61484 0.11424 3.52234 23 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 24 3.46393 0.12659 3.51207 2.85138 24 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 25 0.13841 3.40703 2.81928 3.31124 25 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 26 3.11571 2.61236 3.16282 0.17437 26 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 27 2.96611 3.61484 0.11424 3.52234 27 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 28 3.11571 2.61236 3.16282 0.17437 28 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 29 3.46393 0.12659 3.51207 2.85138 29 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 30 3.11571 2.61236 3.16282 0.17437 30 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 31 2.96611 3.61484 0.11424 3.52234 31 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 32 3.11571 2.61236 3.16282 0.17437 32 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 33 3.11571 2.61236 3.16282 0.17437 33 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 34 3.11571 2.61236 3.16282 0.17437 34 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 35 2.96611 3.61484 0.11424 3.52234 35 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 36 0.13841 3.40703 2.81928 3.31124 36 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 37 2.96611 3.61484 0.11424 3.52234 37 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 38 3.11571 2.61236 3.16282 0.17437 38 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 39 2.96611 3.61484 0.11424 3.52234 39 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 40 3.11571 2.61236 3.16282 0.17437 40 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 41 3.46393 0.12659 3.51207 2.85138 41 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 42 3.46393 0.12659 3.51207 2.85138 42 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 43 2.96611 3.61484 0.11424 3.52234 43 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 44 3.20481 0.18755 3.26108 2.38493 44 - - 1.38629 1.38629 1.38629 1.38629 0.03632 4.02668 4.02668 1.46634 0.26236 1.09861 0.40547 45 0.13841 3.40703 2.81928 3.31124 45 - - 1.38629 1.38629 1.38629 1.38629 0.01832 4.00869 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:42:52 2012 NSEQ 4 EFFN 3.175781 CKSUM 3810186819 STATS LOCAL MSV -8.1688 0.71933 STATS LOCAL VITERBI -7.7118 0.71933 STATS LOCAL FORWARD -4.1218 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.40693 1.26714 1.31628 1.58309 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 * 1 3.37748 0.13704 3.42926 2.78832 1 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 2 2.91360 3.53861 0.12268 3.43825 2 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 3 0.14843 3.33206 2.77050 3.22920 3 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 4 3.37748 0.13704 3.42926 2.78832 4 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 5 3.37748 0.13704 3.42926 2.78832 5 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 6 3.37748 0.13704 3.42926 2.78832 6 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 7 2.91360 3.53861 0.12268 3.43825 7 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 8 3.04021 2.56430 3.09020 0.18668 8 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 9 0.14843 3.33206 2.77050 3.22920 9 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 10 0.14843 3.33206 2.77050 3.22920 10 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 11 3.04021 2.56430 3.09020 0.18668 11 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 12 2.91360 3.53861 0.12268 3.43825 12 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 13 2.91360 3.53861 0.12268 3.43825 13 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 14 3.04021 2.56430 3.09020 0.18668 14 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 15 2.91360 3.53861 0.12268 3.43825 15 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 16 2.91360 3.53861 0.12268 3.43825 16 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 17 0.14843 3.33206 2.77050 3.22920 17 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 18 3.04021 2.56430 3.09020 0.18668 18 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 19 2.91360 3.53861 0.12268 3.43825 19 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 20 3.04021 2.56430 3.09020 0.18668 20 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 21 3.37748 0.13704 3.42926 2.78832 21 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 22 3.04021 2.56430 3.09020 0.18668 22 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 23 3.37748 0.13704 3.42926 2.78832 23 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 24 2.91360 3.53861 0.12268 3.43825 24 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 25 2.91360 3.53861 0.12268 3.43825 25 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 26 3.37748 0.13704 3.42926 2.78832 26 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 27 3.04021 2.56430 3.09020 0.18668 27 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 28 3.37748 0.13704 3.42926 2.78832 28 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 29 3.37748 0.13704 3.42926 2.78832 29 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 30 3.37748 0.13704 3.42926 2.78832 30 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 31 0.14843 3.33206 2.77050 3.22920 31 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 32 3.37748 0.13704 3.42926 2.78832 32 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 33 0.14843 3.33206 2.77050 3.22920 33 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 34 3.04021 2.56430 3.09020 0.18668 34 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 35 3.37748 0.13704 3.42926 2.78832 35 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 36 2.91360 3.53861 0.12268 3.43825 36 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 37 0.14843 3.33206 2.77050 3.22920 37 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 38 3.04021 2.56430 3.09020 0.18668 38 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 39 2.91360 3.53861 0.12268 3.43825 39 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 40 0.14843 3.33206 2.77050 3.22920 40 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 41 0.14843 3.33206 2.77050 3.22920 41 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 42 2.91360 3.53861 0.12268 3.43825 42 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 43 0.14843 3.33206 2.77050 3.22920 43 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 44 0.14843 3.33206 2.77050 3.22920 44 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 45 3.37748 0.13704 3.42926 2.78832 45 - - 1.38629 1.38629 1.38629 1.38629 0.01914 3.96571 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:44:17 2012 NSEQ 4 EFFN 3.324219 CKSUM 2806458298 STATS LOCAL MSV -8.2402 0.71932 STATS LOCAL VITERBI -7.5865 0.71932 STATS LOCAL FORWARD -3.9489 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16164 1.28185 1.60749 1.56488 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 0.00000 * 1 2.63347 0.44817 2.70341 1.50328 1 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 2 0.14183 3.38076 2.80224 3.28247 2 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 3 0.14183 3.38076 2.80224 3.28247 3 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 4 3.43368 0.13014 3.48311 2.82941 4 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 5 3.08911 2.59546 3.13724 0.17860 5 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 6 3.43368 0.13014 3.48311 2.82941 6 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 7 3.08911 2.59546 3.13724 0.17860 7 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 8 3.43368 0.13014 3.48311 2.82941 8 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 9 0.14183 3.38076 2.80224 3.28247 9 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 10 0.14183 3.38076 2.80224 3.28247 10 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 11 3.43368 0.13014 3.48311 2.82941 11 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 12 0.14183 3.38076 2.80224 3.28247 12 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 13 0.14183 3.38076 2.80224 3.28247 13 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 14 3.43368 0.13014 3.48311 2.82941 14 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 15 2.94787 3.58826 0.11710 3.49298 15 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 16 2.94787 3.58826 0.11710 3.49298 16 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 17 0.14183 3.38076 2.80224 3.28247 17 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 18 3.08911 2.59546 3.13724 0.17860 18 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 19 0.14183 3.38076 2.80224 3.28247 19 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 20 3.08911 2.59546 3.13724 0.17860 20 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 21 3.43368 0.13014 3.48311 2.82941 21 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 22 3.08911 2.59546 3.13724 0.17860 22 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 23 3.08911 2.59546 3.13724 0.17860 23 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 24 2.94787 3.58826 0.11710 3.49298 24 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 25 2.94787 3.58826 0.11710 3.49298 25 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 26 3.43368 0.13014 3.48311 2.82941 26 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 27 3.08911 2.59546 3.13724 0.17860 27 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 28 3.43368 0.13014 3.48311 2.82941 28 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 29 3.08911 2.59546 3.13724 0.17860 29 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 30 3.43368 0.13014 3.48311 2.82941 30 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 31 2.94787 3.58826 0.11710 3.49298 31 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 32 3.43368 0.13014 3.48311 2.82941 32 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 33 0.14183 3.38076 2.80224 3.28247 33 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 34 0.14183 3.38076 2.80224 3.28247 34 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 35 3.43368 0.13014 3.48311 2.82941 35 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 36 2.94787 3.58826 0.11710 3.49298 36 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 37 0.14183 3.38076 2.80224 3.28247 37 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 38 3.08911 2.59546 3.13724 0.17860 38 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 39 2.94787 3.58826 0.11710 3.49298 39 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 40 0.14183 3.38076 2.80224 3.28247 40 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 41 0.14183 3.38076 2.80224 3.28247 41 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 42 2.94787 3.58826 0.11710 3.49298 42 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 43 0.14183 3.38076 2.80224 3.28247 43 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 44 0.14183 3.38076 2.80224 3.28247 44 - - 1.38629 1.38629 1.38629 1.38629 0.03688 4.01173 4.01173 1.46634 0.26236 1.09861 0.40547 45 3.43368 0.13014 3.48311 2.82941 45 - - 1.38629 1.38629 1.38629 1.38629 0.01861 3.99346 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twoa_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:43:01 2012 NSEQ 4 EFFN 3.363281 CKSUM 3693864443 STATS LOCAL MSV -8.0312 0.71931 STATS LOCAL VITERBI -7.6530 0.71931 STATS LOCAL FORWARD -4.6865 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.30997 1.36794 1.37527 1.50161 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 0.00000 * 1 0.94201 1.03323 2.14067 1.98979 1 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 2 0.14020 3.39317 2.81030 3.29606 2 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 3 0.14020 3.39317 2.81030 3.29606 3 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 4 3.44798 0.12845 3.49681 2.83981 4 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 5 3.10166 2.60344 3.14932 0.17659 5 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 6 3.44798 0.12845 3.49681 2.83981 6 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 7 2.95651 3.60084 0.11574 3.50687 7 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 8 3.10166 2.60344 3.14932 0.17659 8 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 9 0.14020 3.39317 2.81030 3.29606 9 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 10 0.14020 3.39317 2.81030 3.29606 10 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 11 3.44798 0.12845 3.49681 2.83981 11 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 12 2.95651 3.60084 0.11574 3.50687 12 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 13 2.95651 3.60084 0.11574 3.50687 13 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 14 3.10166 2.60344 3.14932 0.17659 14 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 15 2.95651 3.60084 0.11574 3.50687 15 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 16 2.95651 3.60084 0.11574 3.50687 16 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 17 0.14020 3.39317 2.81030 3.29606 17 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 18 3.10166 2.60344 3.14932 0.17659 18 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 19 2.95651 3.60084 0.11574 3.50687 19 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 20 3.10166 2.60344 3.14932 0.17659 20 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 21 3.44798 0.12845 3.49681 2.83981 21 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 22 3.10166 2.60344 3.14932 0.17659 22 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 23 3.10166 2.60344 3.14932 0.17659 23 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 24 2.95651 3.60084 0.11574 3.50687 24 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 25 2.95651 3.60084 0.11574 3.50687 25 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 26 3.44798 0.12845 3.49681 2.83981 26 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 27 3.10166 2.60344 3.14932 0.17659 27 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 28 3.44798 0.12845 3.49681 2.83981 28 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 29 3.44798 0.12845 3.49681 2.83981 29 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 30 3.44798 0.12845 3.49681 2.83981 30 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 31 0.14020 3.39317 2.81030 3.29606 31 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 32 3.44798 0.12845 3.49681 2.83981 32 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 33 0.14020 3.39317 2.81030 3.29606 33 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 34 3.10166 2.60344 3.14932 0.17659 34 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 35 3.44798 0.12845 3.49681 2.83981 35 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 36 2.95651 3.60084 0.11574 3.50687 36 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 37 0.14020 3.39317 2.81030 3.29606 37 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 38 3.10166 2.60344 3.14932 0.17659 38 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 39 2.95651 3.60084 0.11574 3.50687 39 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 40 0.14020 3.39317 2.81030 3.29606 40 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 41 0.14020 3.39317 2.81030 3.29606 41 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 42 2.95651 3.60084 0.11574 3.50687 42 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 43 0.14020 3.39317 2.81030 3.29606 43 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 44 0.14020 3.39317 2.81030 3.29606 44 - - 1.38629 1.38629 1.38629 1.38629 0.03661 4.01877 4.01877 1.46634 0.26236 1.09861 0.40547 45 3.44798 0.12845 3.49681 2.83981 45 - - 1.38629 1.38629 1.38629 1.38629 0.01847 4.00063 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twob_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:43:07 2012 NSEQ 17 EFFN 3.399170 CKSUM 1249095045 STATS LOCAL MSV -7.3126 0.71931 STATS LOCAL VITERBI -7.5101 0.71931 STATS LOCAL FORWARD -4.2778 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26013 1.46710 1.22336 1.65261 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 0.00000 * 1 0.13874 3.40444 2.81761 3.30841 1 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 2 0.13874 3.40444 2.81761 3.30841 2 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 3 0.13874 3.40444 2.81761 3.30841 3 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 4 3.46095 0.12694 3.50922 2.84922 4 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 5 3.11308 2.61070 3.16030 0.17478 5 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 6 3.46095 0.12694 3.50922 2.84922 6 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 7 2.96432 3.61223 0.11452 3.51946 7 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 8 3.11308 2.61070 3.16030 0.17478 8 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 9 2.96432 3.61223 0.11452 3.51946 9 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 10 0.13874 3.40444 2.81761 3.30841 10 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 11 3.46095 0.12694 3.50922 2.84922 11 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 12 2.96432 3.61223 0.11452 3.51946 12 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 13 2.96432 3.61223 0.11452 3.51946 13 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 14 3.11308 2.61070 3.16030 0.17478 14 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 15 2.96432 3.61223 0.11452 3.51946 15 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 16 2.96432 3.61223 0.11452 3.51946 16 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 17 0.13874 3.40444 2.81761 3.30841 17 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 18 3.11308 2.61070 3.16030 0.17478 18 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 19 2.96432 3.61223 0.11452 3.51946 19 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 20 3.11308 2.61070 3.16030 0.17478 20 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 21 3.46095 0.12694 3.50922 2.84922 21 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 22 3.11308 2.61070 3.16030 0.17478 22 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 23 0.50827 2.40841 2.29505 1.57141 23 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 24 2.96432 3.61223 0.11452 3.51946 24 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 25 2.96432 3.61223 0.11452 3.51946 25 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 26 3.46095 0.12694 3.50922 2.84922 26 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 27 3.11308 2.61070 3.16030 0.17478 27 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 28 3.46095 0.12694 3.50922 2.84922 28 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 29 3.46095 0.12694 3.50922 2.84922 29 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 30 0.77807 2.53217 0.99592 2.38768 30 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 31 2.96432 3.61223 0.11452 3.51946 31 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 32 3.46095 0.12694 3.50922 2.84922 32 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 33 0.13874 3.40444 2.81761 3.30841 33 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 34 0.13874 3.40444 2.81761 3.30841 34 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 35 3.46095 0.12694 3.50922 2.84922 35 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 36 2.96432 3.61223 0.11452 3.51946 36 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 37 0.13874 3.40444 2.81761 3.30841 37 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 38 3.11308 2.61070 3.16030 0.17478 38 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 39 2.96432 3.61223 0.11452 3.51946 39 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 40 0.13874 3.40444 2.81761 3.30841 40 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 41 0.13874 3.40444 2.81761 3.30841 41 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 42 2.96432 3.61223 0.11452 3.51946 42 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 43 0.13874 3.40444 2.81761 3.30841 43 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 44 0.13874 3.40444 2.81761 3.30841 44 - - 1.38629 1.38629 1.38629 1.38629 0.03637 4.02520 4.02520 1.46634 0.26236 1.09861 0.40547 45 3.46095 0.12694 3.50922 2.84922 45 - - 1.38629 1.38629 1.38629 1.38629 0.01835 4.00718 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twoc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:43:14 2012 NSEQ 2 EFFN 2.000000 CKSUM 361171468 STATS LOCAL MSV -7.5783 0.72809 STATS LOCAL VITERBI -8.1252 0.72809 STATS LOCAL FORWARD -3.2306 0.72809 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26706 1.29688 1.35098 1.68215 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.92825 2.28391 0.95698 2.13014 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twod_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:43:28 2012 NSEQ 3 EFFN 3.000000 CKSUM 3586106311 STATS LOCAL MSV -8.0967 0.72012 STATS LOCAL VITERBI -7.6587 0.72012 STATS LOCAL FORWARD -4.5849 0.72012 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27863 1.33133 1.37926 1.58138 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97980 2.52563 3.03204 0.19727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.15719 3.27118 2.73043 3.16274 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.15719 3.27118 2.73043 3.16274 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twoe_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:43:35 2012 NSEQ 6 EFFN 3.202148 CKSUM 2099097258 STATS LOCAL MSV -8.0529 0.71932 STATS LOCAL VITERBI -7.6277 0.71932 STATS LOCAL FORWARD -4.5099 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21596 1.39906 1.37774 1.58670 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 0.00000 * 1 0.14721 3.34089 2.77627 3.23885 1 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 2 0.14721 3.34089 2.77627 3.23885 2 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 3 0.14721 3.34089 2.77627 3.23885 3 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 4 3.38768 0.13576 3.43904 2.79581 4 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 5 3.04904 2.56994 3.09869 0.18519 5 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 6 3.38768 0.13576 3.43904 2.79581 6 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 7 2.91986 3.54765 0.12164 3.44820 7 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 8 3.04904 2.56994 3.09869 0.18519 8 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 9 2.91986 3.54765 0.12164 3.44820 9 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 10 0.14721 3.34089 2.77627 3.23885 10 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 11 3.38768 0.13576 3.43904 2.79581 11 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 12 2.91986 3.54765 0.12164 3.44820 12 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 13 2.91986 3.54765 0.12164 3.44820 13 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 14 0.14721 3.34089 2.77627 3.23885 14 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 15 2.91986 3.54765 0.12164 3.44820 15 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 16 2.91986 3.54765 0.12164 3.44820 16 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 17 0.14721 3.34089 2.77627 3.23885 17 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 18 3.04904 2.56994 3.09869 0.18519 18 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 19 0.14721 3.34089 2.77627 3.23885 19 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 20 3.04904 2.56994 3.09869 0.18519 20 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 21 3.38768 0.13576 3.43904 2.79581 21 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 22 3.04904 2.56994 3.09869 0.18519 22 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 23 3.04904 2.56994 3.09869 0.18519 23 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 24 2.91986 3.54765 0.12164 3.44820 24 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 25 2.91986 3.54765 0.12164 3.44820 25 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 26 3.38768 0.13576 3.43904 2.79581 26 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 27 3.04904 2.56994 3.09869 0.18519 27 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 28 3.38768 0.13576 3.43904 2.79581 28 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 29 3.38768 0.13576 3.43904 2.79581 29 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 30 3.38768 0.13576 3.43904 2.79581 30 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 31 0.14721 3.34089 2.77627 3.23885 31 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 32 3.38768 0.13576 3.43904 2.79581 32 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 33 0.14721 3.34089 2.77627 3.23885 33 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 34 3.04904 2.56994 3.09869 0.18519 34 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 35 3.38768 0.13576 3.43904 2.79581 35 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 36 2.91986 3.54765 0.12164 3.44820 36 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 37 0.14721 3.34089 2.77627 3.23885 37 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 38 3.04904 2.56994 3.09869 0.18519 38 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 39 2.91986 3.54765 0.12164 3.44820 39 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 40 0.14721 3.34089 2.77627 3.23885 40 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 41 0.14721 3.34089 2.77627 3.23885 41 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 42 2.91986 3.54765 0.12164 3.44820 42 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 43 0.14721 3.34089 2.77627 3.23885 43 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 44 0.14721 3.34089 2.77627 3.23885 44 - - 1.38629 1.38629 1.38629 1.38629 0.03773 3.98938 3.98938 1.46634 0.26236 1.09861 0.40547 45 3.38768 0.13576 3.43904 2.79581 45 - - 1.38629 1.38629 1.38629 1.38629 0.01904 3.97070 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twof_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:43:44 2012 NSEQ 2 EFFN 2.000000 CKSUM 538168776 STATS LOCAL MSV -7.5903 0.72774 STATS LOCAL VITERBI -8.2624 0.72774 STATS LOCAL FORWARD -3.7407 0.72774 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28897 1.34866 1.37416 1.55209 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twog_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:43:53 2012 NSEQ 2 EFFN 2.000000 CKSUM 433536473 STATS LOCAL MSV -7.5756 0.72824 STATS LOCAL VITERBI -8.2789 0.72824 STATS LOCAL FORWARD -3.5811 0.72824 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33746 1.38280 1.31433 1.52346 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.15554 1.00938 2.23102 0.88601 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.23862 2.84929 2.43386 2.70756 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Rhodophyta_58S_start_twoh_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:44:05 2012 NSEQ 2 EFFN 2.000000 CKSUM 629811214 STATS LOCAL MSV -7.3522 0.72804 STATS LOCAL VITERBI -8.2940 0.72804 STATS LOCAL FORWARD -3.7313 0.72804 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34240 1.34077 1.43638 1.42982 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.23862 2.84929 2.43386 2.70756 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhodophyta_4_LSU_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:10:04 2012 NSEQ 2 EFFN 2.000000 CKSUM 4069474395 STATS LOCAL MSV -7.4758 0.72803 STATS LOCAL VITERBI -8.1006 0.72803 STATS LOCAL FORWARD -3.3098 0.72803 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.19186 1.40481 1.49426 1.48495 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.23862 2.84929 2.43386 2.70756 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.81865 0.23582 2.88868 2.35662 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhodophyta_4_LSU_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:09:48 2012 NSEQ 40 EFFN 3.276367 CKSUM 565607296 STATS LOCAL MSV -8.0920 0.71934 STATS LOCAL VITERBI -7.6656 0.71934 STATS LOCAL FORWARD -3.9440 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11205 1.39822 1.60365 1.50094 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 0.00000 * 1 3.07355 2.58556 3.12228 0.18112 1 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 2 3.07355 2.58556 3.12228 0.18112 2 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 3 3.07355 2.58556 3.12228 0.18112 3 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 4 2.93708 3.57257 0.11883 3.47567 4 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 5 2.93708 3.57257 0.11883 3.47567 5 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 6 0.14388 3.36532 2.79221 3.26557 6 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 7 3.07355 2.58556 3.12228 0.18112 7 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 8 3.41588 0.13228 3.46607 2.81644 8 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 9 3.07355 2.58556 3.12228 0.18112 9 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 10 3.41588 0.13228 3.46607 2.81644 10 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 11 0.14388 3.36532 2.79221 3.26557 11 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 12 0.14388 3.36532 2.79221 3.26557 12 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 13 0.14388 3.36532 2.79221 3.26557 13 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 14 3.07355 2.58556 3.12228 0.18112 14 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 15 3.41588 0.13228 3.46607 2.81644 15 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 16 0.14388 3.36532 2.79221 3.26557 16 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 17 2.93708 3.57257 0.11883 3.47567 17 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 18 0.14388 3.36532 2.79221 3.26557 18 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 19 3.19001 0.18613 3.24682 2.41058 19 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 20 0.14388 3.36532 2.79221 3.26557 20 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 21 0.14388 3.36532 2.79221 3.26557 21 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 22 2.93708 3.57257 0.11883 3.47567 22 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 23 0.14388 3.36532 2.79221 3.26557 23 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 24 3.41588 0.13228 3.46607 2.81644 24 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 25 2.93708 3.57257 0.11883 3.47567 25 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 26 0.14388 3.36532 2.79221 3.26557 26 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 27 3.41588 0.13228 3.46607 2.81644 27 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 28 3.41588 0.13228 3.46607 2.81644 28 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 29 3.41588 0.13228 3.46607 2.81644 29 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 30 2.93708 3.57257 0.11883 3.47567 30 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 31 3.41588 0.13228 3.46607 2.81644 31 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 32 3.07355 2.58556 3.12228 0.18112 32 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 33 2.93708 3.57257 0.11883 3.47567 33 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 34 0.14388 3.36532 2.79221 3.26557 34 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 35 0.14388 3.36532 2.79221 3.26557 35 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 36 3.41588 0.13228 3.46607 2.81644 36 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 37 3.07355 2.58556 3.12228 0.18112 37 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 38 3.07355 2.58556 3.12228 0.18112 38 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 39 0.14388 3.36532 2.79221 3.26557 39 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 40 0.14388 3.36532 2.79221 3.26557 40 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 41 2.93708 3.57257 0.11883 3.47567 41 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 42 3.41588 0.13228 3.46607 2.81644 42 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 43 0.14388 3.36532 2.79221 3.26557 43 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 44 3.07355 2.58556 3.12228 0.18112 44 - - 1.38629 1.38629 1.38629 1.38629 0.03720 4.00303 4.00303 1.46634 0.26236 1.09861 0.40547 45 0.14388 3.36532 2.79221 3.26557 45 - - 1.38629 1.38629 1.38629 1.38629 0.01878 3.98460 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhodophyta_4_LSU_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:09:23 2012 NSEQ 10 EFFN 3.305664 CKSUM 3245122891 STATS LOCAL MSV -8.3526 0.71932 STATS LOCAL VITERBI -7.6782 0.71932 STATS LOCAL FORWARD -3.9655 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11041 1.53680 1.60255 1.36992 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 0.00000 * 1 3.08310 2.59163 3.13146 0.17957 1 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 2 3.08310 2.59163 3.13146 0.17957 2 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 3 3.08310 2.59163 3.13146 0.17957 3 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 4 2.94371 3.58221 0.11777 3.48630 4 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 5 2.94371 3.58221 0.11777 3.48630 5 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 6 0.14262 3.37480 2.79837 3.27595 6 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 7 3.08310 2.59163 3.13146 0.17957 7 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 8 3.42681 0.13096 3.47654 2.82441 8 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 9 3.08310 2.59163 3.13146 0.17957 9 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 10 3.42681 0.13096 3.47654 2.82441 10 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 11 0.14262 3.37480 2.79837 3.27595 11 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 12 0.14262 3.37480 2.79837 3.27595 12 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 13 0.14262 3.37480 2.79837 3.27595 13 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 14 3.08310 2.59163 3.13146 0.17957 14 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 15 3.42681 0.13096 3.47654 2.82441 15 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 16 0.14262 3.37480 2.79837 3.27595 16 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 17 2.94371 3.58221 0.11777 3.48630 17 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 18 0.14262 3.37480 2.79837 3.27595 18 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 19 3.42681 0.13096 3.47654 2.82441 19 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 20 0.14262 3.37480 2.79837 3.27595 20 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 21 0.14262 3.37480 2.79837 3.27595 21 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 22 2.94371 3.58221 0.11777 3.48630 22 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 23 0.14262 3.37480 2.79837 3.27595 23 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 24 3.08310 2.59163 3.13146 0.17957 24 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 25 2.94371 3.58221 0.11777 3.48630 25 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 26 0.14262 3.37480 2.79837 3.27595 26 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 27 3.42681 0.13096 3.47654 2.82441 27 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 28 3.42681 0.13096 3.47654 2.82441 28 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 29 3.42681 0.13096 3.47654 2.82441 29 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 30 2.94371 3.58221 0.11777 3.48630 30 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 31 3.42681 0.13096 3.47654 2.82441 31 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 32 3.08310 2.59163 3.13146 0.17957 32 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 33 2.94371 3.58221 0.11777 3.48630 33 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 34 0.14262 3.37480 2.79837 3.27595 34 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 35 0.14262 3.37480 2.79837 3.27595 35 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 36 3.08310 2.59163 3.13146 0.17957 36 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 37 3.08310 2.59163 3.13146 0.17957 37 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 38 3.08310 2.59163 3.13146 0.17957 38 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 39 0.14262 3.37480 2.79837 3.27595 39 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 40 0.14262 3.37480 2.79837 3.27595 40 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 41 2.94371 3.58221 0.11777 3.48630 41 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 42 3.42681 0.13096 3.47654 2.82441 42 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 43 0.14262 3.37480 2.79837 3.27595 43 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 44 3.08310 2.59163 3.13146 0.17957 44 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 45 0.14262 3.37480 2.79837 3.27595 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.99003 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhodophyta_4_LSU_start_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:10:12 2012 NSEQ 10 EFFN 3.305664 CKSUM 3245122891 STATS LOCAL MSV -8.3526 0.71932 STATS LOCAL VITERBI -7.6782 0.71932 STATS LOCAL FORWARD -3.9655 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11041 1.53680 1.60255 1.36992 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 0.00000 * 1 3.08310 2.59163 3.13146 0.17957 1 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 2 3.08310 2.59163 3.13146 0.17957 2 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 3 3.08310 2.59163 3.13146 0.17957 3 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 4 2.94371 3.58221 0.11777 3.48630 4 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 5 2.94371 3.58221 0.11777 3.48630 5 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 6 0.14262 3.37480 2.79837 3.27595 6 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 7 3.08310 2.59163 3.13146 0.17957 7 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 8 3.42681 0.13096 3.47654 2.82441 8 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 9 3.08310 2.59163 3.13146 0.17957 9 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 10 3.42681 0.13096 3.47654 2.82441 10 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 11 0.14262 3.37480 2.79837 3.27595 11 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 12 0.14262 3.37480 2.79837 3.27595 12 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 13 0.14262 3.37480 2.79837 3.27595 13 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 14 3.08310 2.59163 3.13146 0.17957 14 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 15 3.42681 0.13096 3.47654 2.82441 15 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 16 0.14262 3.37480 2.79837 3.27595 16 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 17 2.94371 3.58221 0.11777 3.48630 17 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 18 0.14262 3.37480 2.79837 3.27595 18 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 19 3.42681 0.13096 3.47654 2.82441 19 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 20 0.14262 3.37480 2.79837 3.27595 20 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 21 0.14262 3.37480 2.79837 3.27595 21 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 22 2.94371 3.58221 0.11777 3.48630 22 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 23 0.14262 3.37480 2.79837 3.27595 23 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 24 3.08310 2.59163 3.13146 0.17957 24 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 25 2.94371 3.58221 0.11777 3.48630 25 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 26 0.14262 3.37480 2.79837 3.27595 26 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 27 3.42681 0.13096 3.47654 2.82441 27 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 28 3.42681 0.13096 3.47654 2.82441 28 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 29 3.42681 0.13096 3.47654 2.82441 29 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 30 2.94371 3.58221 0.11777 3.48630 30 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 31 3.42681 0.13096 3.47654 2.82441 31 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 32 3.08310 2.59163 3.13146 0.17957 32 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 33 2.94371 3.58221 0.11777 3.48630 33 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 34 0.14262 3.37480 2.79837 3.27595 34 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 35 0.14262 3.37480 2.79837 3.27595 35 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 36 3.08310 2.59163 3.13146 0.17957 36 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 37 3.08310 2.59163 3.13146 0.17957 37 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 38 3.08310 2.59163 3.13146 0.17957 38 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 39 0.14262 3.37480 2.79837 3.27595 39 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 40 0.14262 3.37480 2.79837 3.27595 40 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 41 2.94371 3.58221 0.11777 3.48630 41 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 42 3.42681 0.13096 3.47654 2.82441 42 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 43 0.14262 3.37480 2.79837 3.27595 43 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 44 3.08310 2.59163 3.13146 0.17957 44 - - 1.38629 1.38629 1.38629 1.38629 0.03700 4.00836 4.00836 1.46634 0.26236 1.09861 0.40547 45 0.14262 3.37480 2.79837 3.27595 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.99003 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhodophyta_4_LSU_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:09:39 2012 NSEQ 3 EFFN 3.000000 CKSUM 2901651986 STATS LOCAL MSV -8.1984 0.72045 STATS LOCAL VITERBI -7.6948 0.72045 STATS LOCAL FORWARD -3.8288 0.72045 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11685 1.46208 1.59584 1.43465 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.15719 3.27118 2.73043 3.16274 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Rhodophyta_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 22:09:31 2012 NSEQ 3 EFFN 3.000000 CKSUM 1115734847 STATS LOCAL MSV -8.1731 0.72021 STATS LOCAL VITERBI -7.6315 0.72021 STATS LOCAL FORWARD -3.7687 0.72021 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.11609 1.47103 1.43683 1.58438 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 0.15719 3.27118 2.73043 3.16274 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Rhodophyta_1_SSU_end_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 21:06:17 2012 NSEQ 95 EFFN 3.348541 CKSUM 2011377772 STATS LOCAL MSV -7.9892 0.71931 STATS LOCAL VITERBI -7.7135 0.71931 STATS LOCAL FORWARD -4.1047 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.32905 1.53799 1.25544 1.44601 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 0.00000 * 1 0.14081 3.38851 2.80728 3.29095 1 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 2 2.95327 3.59611 0.11625 3.50165 2 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 3 3.09694 2.60044 3.14477 0.17734 3 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 4 3.44261 0.12908 3.49166 2.83591 4 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 5 2.95327 3.59611 0.11625 3.50165 5 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 6 3.09694 2.60044 3.14477 0.17734 6 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 7 0.14081 3.38851 2.80728 3.29095 7 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 8 0.14081 3.38851 2.80728 3.29095 8 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 9 3.44261 0.12908 3.49166 2.83591 9 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 10 0.14081 3.38851 2.80728 3.29095 10 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 11 0.14081 3.38851 2.80728 3.29095 11 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 12 2.95327 3.59611 0.11625 3.50165 12 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 13 2.95327 3.59611 0.11625 3.50165 13 - - 1.38629 1.38629 1.38629 1.38629 0.09712 4.01612 2.59653 1.46634 0.26236 1.09861 0.40547 14 2.64581 2.38647 2.37397 0.29573 14 - - 1.38629 1.38629 1.38629 1.38629 0.03895 3.95795 3.95795 1.46634 0.26236 0.39449 1.12093 15 3.09694 2.60044 3.14477 0.17734 15 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 16 3.09694 2.60044 3.14477 0.17734 16 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 17 3.44261 0.12908 3.49166 2.83591 17 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 18 3.44261 0.12908 3.49166 2.83591 18 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 19 2.95327 3.59611 0.11625 3.50165 19 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 20 3.09694 2.60044 3.14477 0.17734 20 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 21 0.14081 3.38851 2.80728 3.29095 21 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 22 2.95327 3.59611 0.11625 3.50165 22 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 23 2.95327 3.59611 0.11625 3.50165 23 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 24 3.09694 2.60044 3.14477 0.17734 24 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 25 2.95327 3.59611 0.11625 3.50165 25 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 26 0.14081 3.38851 2.80728 3.29095 26 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 27 0.14081 3.38851 2.80728 3.29095 27 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 28 3.44261 0.12908 3.49166 2.83591 28 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 29 3.44261 0.12908 3.49166 2.83591 29 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 30 3.09694 2.60044 3.14477 0.17734 30 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 31 2.49053 2.77369 0.31322 2.09058 31 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 32 3.44261 0.12908 3.49166 2.83591 32 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 33 2.95327 3.59611 0.11625 3.50165 33 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 34 2.95327 3.59611 0.11625 3.50165 34 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 35 0.14081 3.38851 2.80728 3.29095 35 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 36 0.14081 3.38851 2.80728 3.29095 36 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 37 2.95327 3.59611 0.11625 3.50165 37 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 38 2.95327 3.59611 0.11625 3.50165 38 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 39 0.14081 3.38851 2.80728 3.29095 39 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 40 3.09694 2.60044 3.14477 0.17734 40 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 41 3.44261 0.12908 3.49166 2.83591 41 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 42 0.14081 3.38851 2.80728 3.29095 42 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 43 3.09694 2.60044 3.14477 0.17734 43 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 44 3.09694 2.60044 3.14477 0.17734 44 - - 1.38629 1.38629 1.38629 1.38629 0.03671 4.01612 4.01612 1.46634 0.26236 1.09861 0.40547 45 3.44261 0.12908 3.49166 2.83591 45 - - 1.38629 1.38629 1.38629 1.38629 0.01852 3.99793 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhodophyta_58S_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Nov 16 22:26:26 2012 NSEQ 17 EFFN 3.258057 CKSUM 99854956 STATS LOCAL MSV -7.9161 0.71933 STATS LOCAL VITERBI -7.6864 0.71933 STATS LOCAL FORWARD -4.2261 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82088 1.31276 1.14101 1.38812 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 0.00000 * 1 2.93288 3.56649 0.11951 3.46896 1 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 2 3.40899 0.13312 3.45947 2.81141 2 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 3 2.93288 3.56649 0.11951 3.46896 3 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 4 3.40899 0.13312 3.45947 2.81141 4 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 5 3.06755 2.58173 3.11650 0.18211 5 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 6 3.40899 0.13312 3.45947 2.81141 6 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 7 2.93288 3.56649 0.11951 3.46896 7 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 8 3.40899 0.13312 3.45947 2.81141 8 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 9 2.93288 3.56649 0.11951 3.46896 9 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 10 2.93288 3.56649 0.11951 3.46896 10 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 11 2.93288 3.56649 0.11951 3.46896 11 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 12 3.06755 2.58173 3.11650 0.18211 12 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 13 0.14469 3.35935 2.78832 3.25904 13 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 14 0.14469 3.35935 2.78832 3.25904 14 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 15 3.40899 0.13312 3.45947 2.81141 15 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 16 3.40899 0.13312 3.45947 2.81141 16 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 17 3.40899 0.13312 3.45947 2.81141 17 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 18 3.06755 2.58173 3.11650 0.18211 18 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 19 2.93288 3.56649 0.11951 3.46896 19 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 20 3.40899 0.13312 3.45947 2.81141 20 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 21 2.93288 3.56649 0.11951 3.46896 21 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 22 0.14469 3.35935 2.78832 3.25904 22 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 23 2.93288 3.56649 0.11951 3.46896 23 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 24 3.40899 0.13312 3.45947 2.81141 24 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 25 0.14469 3.35935 2.78832 3.25904 25 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 26 3.06755 2.58173 3.11650 0.18211 26 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 27 2.93288 3.56649 0.11951 3.46896 27 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 28 3.06755 2.58173 3.11650 0.18211 28 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 29 3.40899 0.13312 3.45947 2.81141 29 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 30 3.06755 2.58173 3.11650 0.18211 30 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 31 2.93288 3.56649 0.11951 3.46896 31 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 32 3.06755 2.58173 3.11650 0.18211 32 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 33 3.06755 2.58173 3.11650 0.18211 33 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 34 3.06755 2.58173 3.11650 0.18211 34 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 35 2.93288 3.56649 0.11951 3.46896 35 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 36 0.14469 3.35935 2.78832 3.25904 36 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 37 2.93288 3.56649 0.11951 3.46896 37 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 38 2.60196 1.60547 2.66720 0.42216 38 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 39 2.93288 3.56649 0.11951 3.46896 39 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 40 3.06755 2.58173 3.11650 0.18211 40 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 41 3.40899 0.13312 3.45947 2.81141 41 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 42 3.40899 0.13312 3.45947 2.81141 42 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 43 2.93288 3.56649 0.11951 3.46896 43 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 44 3.06755 2.58173 3.11650 0.18211 44 - - 1.38629 1.38629 1.38629 1.38629 0.03733 3.99968 3.99968 1.46634 0.26236 1.09861 0.40547 45 0.14469 3.35935 2.78832 3.25904 45 - - 1.38629 1.38629 1.38629 1.38629 0.01884 3.98119 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhodophyta_58S_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Nov 16 22:25:48 2012 NSEQ 7 EFFN 3.305176 CKSUM 4199574871 STATS LOCAL MSV -8.1908 0.71932 STATS LOCAL VITERBI -7.8570 0.71932 STATS LOCAL FORWARD -4.1151 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92875 1.60184 1.14085 1.09782 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 0.00000 * 1 2.94360 3.58205 0.11779 3.48613 1 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 2 3.42663 0.13098 3.47636 2.82428 2 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 3 3.08294 2.59153 3.13131 0.17959 3 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 4 3.42663 0.13098 3.47636 2.82428 4 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 5 0.14264 3.37464 2.79827 3.27577 5 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 6 3.08294 2.59153 3.13131 0.17959 6 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 7 2.94360 3.58205 0.11779 3.48613 7 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 8 3.08294 2.59153 3.13131 0.17959 8 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 9 3.42663 0.13098 3.47636 2.82428 9 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 10 3.42663 0.13098 3.47636 2.82428 10 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 11 2.94360 3.58205 0.11779 3.48613 11 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 12 2.94360 3.58205 0.11779 3.48613 12 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 13 2.94360 3.58205 0.11779 3.48613 13 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 14 3.08294 2.59153 3.13131 0.17959 14 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 15 2.94360 3.58205 0.11779 3.48613 15 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 16 2.94360 3.58205 0.11779 3.48613 16 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 17 0.14264 3.37464 2.79827 3.27577 17 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 18 3.08294 2.59153 3.13131 0.17959 18 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 19 2.94360 3.58205 0.11779 3.48613 19 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 20 3.08294 2.59153 3.13131 0.17959 20 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 21 2.94360 3.58205 0.11779 3.48613 21 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 22 0.14264 3.37464 2.79827 3.27577 22 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 23 2.94360 3.58205 0.11779 3.48613 23 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 24 3.42663 0.13098 3.47636 2.82428 24 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 25 0.14264 3.37464 2.79827 3.27577 25 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 26 3.08294 2.59153 3.13131 0.17959 26 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 27 2.94360 3.58205 0.11779 3.48613 27 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 28 3.42663 0.13098 3.47636 2.82428 28 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 29 3.42663 0.13098 3.47636 2.82428 29 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 30 3.08294 2.59153 3.13131 0.17959 30 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 31 2.94360 3.58205 0.11779 3.48613 31 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 32 3.08294 2.59153 3.13131 0.17959 32 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 33 3.08294 2.59153 3.13131 0.17959 33 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 34 3.08294 2.59153 3.13131 0.17959 34 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 35 2.94360 3.58205 0.11779 3.48613 35 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 36 0.14264 3.37464 2.79827 3.27577 36 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 37 2.94360 3.58205 0.11779 3.48613 37 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 38 3.08294 2.59153 3.13131 0.17959 38 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 39 2.94360 3.58205 0.11779 3.48613 39 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 40 3.08294 2.59153 3.13131 0.17959 40 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 41 3.42663 0.13098 3.47636 2.82428 41 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 42 3.08294 2.59153 3.13131 0.17959 42 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 43 3.08294 2.59153 3.13131 0.17959 43 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 44 3.08294 2.59153 3.13131 0.17959 44 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 45 3.08294 2.59153 3.13131 0.17959 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.98994 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Rhodophyta_58S_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Nov 16 22:25:59 2012 NSEQ 7 EFFN 3.264160 CKSUM 2681386467 STATS LOCAL MSV -7.8266 0.71931 STATS LOCAL VITERBI -7.7527 0.71931 STATS LOCAL FORWARD -4.1975 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.72557 1.38143 1.25532 1.25273 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 0.00000 * 1 2.93428 3.56852 0.11929 3.47120 1 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 2 3.41129 0.13284 3.46167 2.81309 2 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 3 2.93428 3.56852 0.11929 3.47120 3 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 4 3.41129 0.13284 3.46167 2.81309 4 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 5 3.06955 2.58301 3.11843 0.18178 5 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 6 3.41129 0.13284 3.46167 2.81309 6 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 7 3.06955 2.58301 3.11843 0.18178 7 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 8 3.41129 0.13284 3.46167 2.81309 8 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 9 2.93428 3.56852 0.11929 3.47120 9 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 10 2.93428 3.56852 0.11929 3.47120 10 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 11 2.93428 3.56852 0.11929 3.47120 11 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 12 3.06955 2.58301 3.11843 0.18178 12 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 13 0.14442 3.36134 2.78962 3.26122 13 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 14 0.14442 3.36134 2.78962 3.26122 14 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 15 3.41129 0.13284 3.46167 2.81309 15 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 16 3.41129 0.13284 3.46167 2.81309 16 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 17 3.41129 0.13284 3.46167 2.81309 17 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 18 3.06955 2.58301 3.11843 0.18178 18 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 19 2.93428 3.56852 0.11929 3.47120 19 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 20 0.14442 3.36134 2.78962 3.26122 20 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 21 2.93428 3.56852 0.11929 3.47120 21 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 22 0.14442 3.36134 2.78962 3.26122 22 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 23 2.93428 3.56852 0.11929 3.47120 23 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 24 3.41129 0.13284 3.46167 2.81309 24 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 25 0.14442 3.36134 2.78962 3.26122 25 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 26 3.06955 2.58301 3.11843 0.18178 26 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 27 2.93428 3.56852 0.11929 3.47120 27 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 28 3.06955 2.58301 3.11843 0.18178 28 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 29 3.41129 0.13284 3.46167 2.81309 29 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 30 3.06955 2.58301 3.11843 0.18178 30 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 31 2.93428 3.56852 0.11929 3.47120 31 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 32 3.06955 2.58301 3.11843 0.18178 32 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 33 3.06955 2.58301 3.11843 0.18178 33 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 34 3.06955 2.58301 3.11843 0.18178 34 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 35 2.93428 3.56852 0.11929 3.47120 35 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 36 0.14442 3.36134 2.78962 3.26122 36 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 37 2.93428 3.56852 0.11929 3.47120 37 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 38 3.06955 2.58301 3.11843 0.18178 38 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 39 2.93428 3.56852 0.11929 3.47120 39 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 40 3.06955 2.58301 3.11843 0.18178 40 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 41 3.41129 0.13284 3.46167 2.81309 41 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 42 0.14442 3.36134 2.78962 3.26122 42 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 43 3.41129 0.13284 3.46167 2.81309 43 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 44 3.06955 2.58301 3.11843 0.18178 44 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 45 3.06955 2.58301 3.11843 0.18178 45 - - 1.38629 1.38629 1.38629 1.38629 0.01882 3.98232 * 1.46634 0.26236 0.00000 * //