Mercurial > repos > okorol > itsx

changeset 2:7c914d783d36 draft

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Uploaded
author okorol
date Tue, 24 Mar 2015 16:47:42 -0400
parents b433586432d7
children 02f17d884136
files ITSx.xml
diffstat 1 files changed, 7 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/ITSx.xml	Tue Mar 24 16:18:36 2015 -0400
+++ b/ITSx.xml	Tue Mar 24 16:47:42 2015 -0400
@@ -56,39 +56,32 @@
   <help>
 **What it does**
 
-Identifies ITS sequences and extracts the ITS regions
+Identifies ITS sequences and extracts the ITS regions.
 
 ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi. As the inclusion of parts of the neighbouring, very conserved, ribosomal genes (SSU, 5S and LSU rRNA sequences) in the sequence identification process can lead to severely misleading results, ITSx identifies and extracts only the ITS regions themselves.
 
 ------
 
 
-**Info**
-
-Galaxy wrapper:
+**Galaxy wrapper**
 
 Microbial Biodiversity Bioinformatics Group
 Agriculture and Agri-Food Canada
 
 Contact: Oksana Korol, oksana.korol[at]agr.gc.ca
-        mbb[at]agr.gc.ca
-
+mbb[at]agr.gc.ca
 
-ITSx tool:
-
+**ITSx tool**
 Version: 1.0.11
-Source code available at:
-http://microbiology.se/software/itsx
+Source code available at:http://microbiology.se/software/itsx
+Copyright (C) 2012-2013 Johan Bengtsson-Palme et al.
 
-Copyright (C) 2012-2013 Johan Bengtsson-Palme et al.
 Contact: Johan Bengtsson-Palme, johan[at]microbiology.se
-Programmer: Johan Bengtsson-Palme
 
 
 **Citation**
 
-Bengtsson-Palme, Johan and Ryberg, Martin and Hartmann, Martin and Branco, Sara and Wang, Zheng and Godhe, Anna and De Wit, Pierre and Sánchez-García, Marisol and Ebersberger, Ingo and de Sousa, Filipe and Amend, Anthony and Jumpponen, Ari and Unterseher, Martin and Kristiansson, Erik and Abarenkov, Kessy and Bertrand, Yann J. K. and Sanli, Kemal and Eriksson, K. Martin and Vik, Unni and Veldre, Vilmar and Nilsson, R. Henrik. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4;10:914-919, 2013.
-
+Bengtsson-Palme et al. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data. Methods in Ecology and Evolution, 4;10:914-919, 2013.
 
   </help>