Mercurial > repos > padge > bwakit
comparison galaxytools/bwakit/test-data/out_bam.log.bwamem @ 0:882aae4b79f0 draft
Uploaded
| author | padge |
|---|---|
| date | Wed, 22 Sep 2021 12:39:52 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:882aae4b79f0 |
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| 1 [M::bwa_idx_load_from_disk] read 0 ALT contigs | |
| 2 [M::process] read 200 sequences (50200 bp)... | |
| 3 [M::process] 0 single-end sequences; 200 paired-end sequences | |
| 4 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (0, 99, 0, 0) | |
| 5 [M::mem_pestat] skip orientation FF as there are not enough pairs | |
| 6 [M::mem_pestat] analyzing insert size distribution for orientation FR... | |
| 7 [M::mem_pestat] (25, 50, 75) percentile: (171, 199, 227) | |
| 8 [M::mem_pestat] low and high boundaries for computing mean and std.dev: (59, 339) | |
| 9 [M::mem_pestat] mean and std.dev: (192.97, 35.99) | |
| 10 [M::mem_pestat] low and high boundaries for proper pairs: (3, 395) | |
| 11 [M::mem_pestat] skip orientation RF as there are not enough pairs | |
| 12 [M::mem_pestat] skip orientation RR as there are not enough pairs | |
| 13 [M::mem_process_seqs] Processed 200 reads in 0.041 CPU sec, 0.041 real sec | |
| 14 [main] Version: 0.7.17-r1188 | |
| 15 [main] CMD: /home/padge/miniconda3/envs/bwakit/bin/bwa mem -p ./test-data/bwa-mem-mt-genome.fa - | |
| 16 [main] Real time: 0.043 sec; CPU: 0.045 sec |