Mercurial > repos > padge > clipkit
comparison clipkit_repo/docs/other_software/index.rst @ 0:49b058e85902 draft
"planemo upload for repository https://github.com/jlsteenwyk/clipkit commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
| author | padge |
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| date | Fri, 25 Mar 2022 13:04:31 +0000 |
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| 1 .. _other_software: | |
| 2 | |
| 3 | |
| 4 Other software | |
| 5 ============== | |
| 6 | |
| 7 ^^^^^ | |
| 8 | |
| 9 We are grateful that you are exploring our software! If this software is of interest | |
| 10 to you, our other software will likely be too. Please see other software below. | |
| 11 | |
| 12 | | |
| 13 | |
| 14 PhyKIT | |
| 15 ------ | |
| 16 |PhyKIT| | |
| 17 | |
| 18 A broadly applicable command line toolkit with 30 (and counting) functions for analyzing | |
| 19 and processing phylogenetic trees and multiple sequence alignments. | |
| 20 | |
| 21 `Publication PDF <https://jlsteenwyk.com/publication_pdfs/2021_Steenwyk_etal_Bioinformatics.pdf>`_; | |
| 22 `Documentation <https://jlsteenwyk.com/PhyKIT/>`_; | |
| 23 `Source code <https://github.com/JLSteenwyk/PhyKIT>`_ | |
| 24 | |
| 25 .. |PhyKIT| image:: ../_static/img/phykit_logo.png | |
| 26 :width: 50% | |
| 27 | |
| 28 | | |
| 29 | |
| 30 orthofisher | |
| 31 ----------- | |
| 32 |orthofisher| | |
| 33 | |
| 34 automated extraction of protein sequences from proteomes using profile Hidden Markov Models | |
| 35 | |
| 36 `Documentation <https://jlsteenwyk.com/orthofisher/>`_; | |
| 37 `Source code <https://github.com/JLSteenwyk/orthofisher>`_ | |
| 38 | |
| 39 .. |orthofisher| image:: ../_static/img/orthofisher_full_logo.jpg | |
| 40 :width: 50% | |
| 41 | |
| 42 | | |
| 43 | |
| 44 treehouse | |
| 45 --------- | |
| 46 | |
| 47 |treehouse| | |
| 48 | |
| 49 prune user inputted phylogenies or phylogenies in our database using an intuitive graphical | |
| 50 user interface. | |
| 51 | |
| 52 `Publication PDF <https://jlsteenwyk.com/publication_pdfs/2019_Steenwyk_and_Rokas_BMC_Research_Notes.pdf>`_; | |
| 53 `Documentation & Source code <https://github.com/JLSteenwyk/treehouse>`_ | |
| 54 | |
| 55 .. |treehouse| image:: ../_static/img/treehouse_logo.png | |
| 56 :width: 50% | |
| 57 | |
| 58 | | |
| 59 | |
| 60 ggpubfigs | |
| 61 --------- | |
| 62 | |
| 63 |ggpubfigs| | |
| 64 | |
| 65 create publication ready figures that are colorblind friendly using our collection of ggplot2 themes | |
| 66 | |
| 67 `Zenodo record <https://zenodo.org/record/4126988#.YCK_2ZNKhlc>`_; | |
| 68 `Documentation & Source code <https://github.com/JLSteenwyk/ggpubfigs>`_ | |
| 69 | |
| 70 .. |ggpubfigs| image:: ../_static/img/ggpubfigs_logo.png | |
| 71 :width: 50% |