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comparison main.jl @ 1:4a5c94d1d8bb draft

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planemo upload for repository https://github.com/kirstvh/MultiplexCrisprDOE commit a920127294bcfcb708881e28144a77a5c10d46d2
author padge
date Wed, 31 Aug 2022 12:13:10 +0000
parents cc0957c46408
children d5832ac370e3
comparison
equal deleted inserted replaced
0:cc0957c46408 1:4a5c94d1d8bb
265 265
266 elseif parsed_args["%COMMAND%"] == "sim" || parsed_args["%COMMAND%"] == "ccp" 266 elseif parsed_args["%COMMAND%"] == "sim" || parsed_args["%COMMAND%"] == "ccp"
267 267
268 filename = command_args["f"] 268 filename = command_args["f"]
269 sheet = 1 269 sheet = 1
270 data = DataFrame(XLSX.readtable(filename, sheet)...) 270 data = DataFrame(XLSX.readtable(filename, sheet))
271 p_gRNA_reads = data[!,"gRNA_read"] 271 p_gRNA_reads = data[!,"gRNA_read"]
272 p_gRNA_reads_normalized = p_gRNA_reads/sum(p_gRNA_reads) # normalize 272 p_gRNA_reads_normalized = p_gRNA_reads/sum(p_gRNA_reads) # normalize
273 f = p_gRNA_reads_normalized 273 f = p_gRNA_reads_normalized
274 grna_dict["p_gRNA_reads"] = f 274 grna_dict["p_gRNA_reads"] = f
275 275
276 filename = command_args["e"] 276 filename = command_args["e"]
277 sheet = 1 277 sheet = 1
278 data = DataFrame(XLSX.readtable(filename, sheet)...) 278 data = DataFrame(XLSX.readtable(filename, sheet))
279 p_gRNA_edit = data[!,"gRNA_edit_efficiency"] 279 p_gRNA_edit = data[!,"gRNA_edit_efficiency"]
280 e = p_gRNA_edit 280 e = p_gRNA_edit
281 grna_dict["p_gRNA_edit"] = e 281 grna_dict["p_gRNA_edit"] = e
282 282
283 x = command_args["x"] 283 x = command_args["x"]