Mercurial > repos > padge > phykit

changeset 1:1ac6ee298657 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/JLSteenwyk/PhyKIT commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
author padge
date Mon, 28 Mar 2022 16:30:53 +0000
parents 37b049bf729a
children
files phykit_alignment_based.xml phykit_tree_based.xml
diffstat 2 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/phykit_alignment_based.xml	Mon Mar 28 16:23:18 2022 +0000
+++ b/phykit_alignment_based.xml	Mon Mar 28 16:30:53 2022 +0000
@@ -49,7 +49,7 @@
         <data name="partition" format="iqtree" label="A partition file ready for input into RAxML or IQ-tree">
             <filter>tools['tool_selector']=='create_concat'</filter>
         </data>
-        <data name="occupancy" format="txt" label="An occupancy file that summarizes the taxon occupancy per sequence">
+        <data name="occupancy" format="tabular" label="An occupancy file that summarizes the taxon occupancy per sequence">
             <filter>tools['tool_selector']=='create_concat'</filter>
         </data>
         <data name="pairwise_id" format="txt" label="Summary statistics unless used with the verbose option in which all pairwise identities will be reported.">
--- a/phykit_tree_based.xml	Mon Mar 28 16:23:18 2022 +0000
+++ b/phykit_tree_based.xml	Mon Mar 28 16:30:53 2022 +0000
@@ -75,7 +75,7 @@
         <test>
             <param name="tool_selector" value="evolutionary_rate" />
             <param name="input1" value="12_YPR191W_Anc_7.548_codon_aln.fasta.clipkit.treefile"/>
-            <output name="evolutionary_rate" file="test_evo_rate.txt"/>
+            <output name="evo_rate" file="test_evo_rate.txt"/>
         </test>
         <test>
             <param name="tool_selector" value="patristic_distances" />