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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable name="R_SCRIPTS_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
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5 </set_environment>
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6 <package name="R" version="3.1.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">http://CRAN.R-project.org/src/base/R-3/R-3.1.0.tar.gz</action>
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10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-x=no</action>
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11 <action type="shell_command">make</action>
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12 <action type="shell_command">make install</action>
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13 <action type="set_environment">
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14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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15 </action>
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16 <action type="shell_command">$INSTALL_DIR/bin/R --no-save <<< "install.packages('getopt', repos='http://cran.r-project.org'); source('http://rnbeads.mpi-inf.mpg.de/install.R')"</action>
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17 </actions>
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18 </install>
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19 <readme>
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20 You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R.
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21 </readme>
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22 </package>
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23 </tool_dependency> |
