Mercurial > repos > pavlo-lutsik > rnbeads
comparison tool_dependencies.xml @ 21:19b0b536a56f draft
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| author | pavlo-lutsik |
|---|---|
| date | Tue, 02 Jul 2013 14:06:58 -0400 |
| parents | a1c96ef6c111 |
| children |
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| 20:c423ac1cb9b3 | 21:19b0b536a56f |
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| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <set_environment version="0.9"> | |
| 4 <environment_variable name="R_SCRIPTS_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | |
| 5 </set_environment> | |
| 6 <package name="R" version="3.0.0"> | |
| 7 <install version="0.9"> | |
| 8 <actions> | |
| 9 <action type="download_by_url">http://CRAN.R-project.org/src/base/R-3/R-3.0.0.tar.gz</action> | |
| 10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-x=no</action> | |
| 11 <action type="shell_command">make</action> | |
| 12 <action type="set_environment"> | |
| 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
| 14 </action> | |
| 15 <action type="shell_command">R --no-save <<< "install.packages("getopt"); source('http://rnbeads.mpi-inf.mpg.de')"</action> | |
| 16 </actions> | |
| 17 </install> | |
| 18 <readme> | |
| 19 You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R. | |
| 20 </readme> | |
| 21 </package> | |
| 22 </tool_dependency> |