Mercurial > repos > pavlo-lutsik > rnbeads

comparison tool_dependencies.xml @ 37:450c8ff1d11a draft

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author pavlo-lutsik
date Fri, 05 Jul 2013 09:08:41 -0400
parents 5874ddbce751
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36:12b2947c0905 37:450c8ff1d11a
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable name="R_SCRIPTS_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment>
6 <package name="R" version="3.0.0">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">http://CRAN.R-project.org/src/base/R-3/R-3.0.0.tar.gz</action>
10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-x=no</action>
11 <action type="shell_command">make</action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action>
15 <action type="shell_command">R --no-save &lt;&lt;&lt; "install.packages("getopt"); source('http://rnbeads.mpi-inf.mpg.de')"</action>
16 </actions>
17 </install>
18 <readme>
19 You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R.
20 </readme>
21 </package>
22 </tool_dependency>