Mercurial > repos > pavlo-lutsik > rnbeads
comparison tool_dependencies.xml @ 33:4feb5eba202c draft
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author | pavlo-lutsik |
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date | Fri, 05 Jul 2013 08:21:24 -0400 |
parents | 5874ddbce751 |
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32:528511446522 | 33:4feb5eba202c |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <set_environment version="1.0"> | |
4 <environment_variable name="R_SCRIPTS_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> | |
5 </set_environment> | |
6 <package name="R" version="3.0.0"> | |
7 <install version="1.0"> | |
8 <actions> | |
9 <action type="download_by_url">http://CRAN.R-project.org/src/base/R-3/R-3.0.0.tar.gz</action> | |
10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-x=no</action> | |
11 <action type="shell_command">make</action> | |
12 <action type="set_environment"> | |
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> | |
14 </action> | |
15 <action type="shell_command">R --no-save <<< "install.packages("getopt"); source('http://rnbeads.mpi-inf.mpg.de')"</action> | |
16 </actions> | |
17 </install> | |
18 <readme> | |
19 You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R. | |
20 </readme> | |
21 </package> | |
22 </tool_dependency> |