Mercurial > repos > pavlo-lutsik > rnbeads
comparison rnb.cloud.4.07.analysis.log @ 31:aad84663f9c2 draft
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author | pavlo-lutsik |
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date | Fri, 05 Jul 2013 08:03:54 -0400 |
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1 2013-07-04 12:48:18 STATUS STARTED RnBeads Pipeline | |
2 2013-07-04 12:48:18 INFO Initialized report index and saved to index.html | |
3 2013-07-04 12:48:18 STATUS STARTED Loading Data | |
4 2013-07-04 12:48:18 STATUS STARTED Loading GEO Data Series | |
5 2013-07-04 12:53:38 INFO Loaded 1 data series from GSE38268 | |
6 2013-07-04 12:53:38 INFO Extracted 6 samples from series 1 | |
7 2013-07-04 12:53:38 INFO Parsed characteristics_ch1 sample information | |
8 2013-07-04 12:53:38 STATUS COMPLETED Loading GEO Data Series | |
9 2013-07-04 12:54:49 STATUS Loaded data from GSE38268. Output object is of class RnBeadSet | |
10 2013-07-04 12:54:50 STATUS Added data loading section | |
11 2013-07-04 12:54:50 STATUS COMPLETED Loading Data | |
12 2013-07-04 12:54:50 STATUS STARTED Normalization | |
13 2013-07-04 12:54:50 WARNING Incompatible values for object and method. Changed the normalization method to "none" | |
14 2013-07-04 12:54:50 WARNING Incompatible values for object and background correction flag. Disabled the background correction | |
15 2013-07-04 12:54:50 STATUS Performed normalization with method "swan" | |
16 2013-07-04 12:54:53 STATUS Added normalization section | |
17 2013-07-04 12:54:53 STATUS COMPLETED Normalization | |
18 2013-07-04 12:54:54 INFO Initialized report index and saved to index.html | |
19 2013-07-04 12:54:54 STATUS STARTED Quality Control | |
20 2013-07-04 12:54:54 STATUS STARTED Quality Control Section | |
21 2013-07-04 12:54:54 INFO No quality information present in the dataset | |
22 2013-07-04 12:54:54 STATUS COMPLETED Quality Control Section | |
23 2013-07-04 12:54:54 STATUS COMPLETED Quality Control | |
24 2013-07-04 12:54:54 STATUS STARTED Visualizing Sample Mixups | |
25 2013-07-04 12:54:54 STATUS STARTED Mixups Visualization Section | |
26 2013-07-04 12:55:15 STATUS Added SNP heatmap | |
27 2013-07-04 12:55:15 STATUS COMPLETED Mixups Visualization Section | |
28 2013-07-04 12:55:15 STATUS COMPLETED Visualizing Sample Mixups | |
29 2013-07-04 12:55:15 INFO Initialized report index and saved to index.html | |
30 2013-07-04 12:55:15 STATUS STARTED Filtering | |
31 2013-07-04 12:55:23 STATUS STARTED Probe Context Removal | |
32 2013-07-04 12:56:00 STATUS Removed 3156 probe(s) out of context | |
33 2013-07-04 12:56:01 STATUS Saved removed sites to /mnt/galaxy/files/000/dataset_3_files/filtering_data/removed_sites_context.csv | |
34 2013-07-04 12:56:01 STATUS Added a corresponding section to the report | |
35 2013-07-04 12:56:01 STATUS COMPLETED Probe Context Removal | |
36 2013-07-04 12:56:03 STATUS STARTED Removal of SNP-enriched Sites | |
37 2013-07-04 12:56:38 STATUS Removed 18987 sites that overlap sites with more than 2 SNP(s) | |
38 2013-07-04 12:56:38 STATUS Saved removed sites to /mnt/galaxy/files/000/dataset_3_files/filtering_data/removed_sites_snp.csv | |
39 2013-07-04 12:56:38 STATUS Added a corresponding section to the report | |
40 2013-07-04 12:56:38 STATUS COMPLETED Removal of SNP-enriched Sites | |
41 2013-07-04 12:56:39 INFO Omitting Greedycut because detection p-values are missing | |
42 2013-07-04 12:56:42 STATUS STARTED Summary of Filtering Procedures | |
43 2013-07-04 12:56:46 STATUS Added summary table of removed and retained values | |
44 2013-07-04 12:57:47 STATUS Added comparison between removed and retained beta values | |
45 2013-07-04 12:57:47 STATUS COMPLETED Summary of Filtering Procedures | |
46 2013-07-04 12:57:47 STATUS COMPLETED Filtering | |
47 2013-07-04 12:57:47 INFO Initialized report index and saved to index.html | |
48 2013-07-04 12:57:47 STATUS STARTED Dimension Reduction Techniques | |
49 2013-07-04 12:57:48 WARNING Removed 4301 loci ( sites ) because they contain missing values | |
50 2013-07-04 12:57:49 STATUS Calculated PCA coordinates | |
51 2013-07-04 12:57:49 STATUS Calculated MDS coordinates using manhattan distance | |
52 2013-07-04 12:57:49 STATUS Calculated MDS coordinates using euclidean distance | |
53 2013-07-04 12:57:50 WARNING Removed 491 loci ( tiling ) because they contain missing values | |
54 2013-07-04 12:57:50 STATUS Calculated PCA coordinates | |
55 2013-07-04 12:57:50 STATUS Calculated MDS coordinates using manhattan distance | |
56 2013-07-04 12:57:50 STATUS Calculated MDS coordinates using euclidean distance | |
57 2013-07-04 12:57:50 WARNING Removed 25 loci ( genes ) because they contain missing values | |
58 2013-07-04 12:57:50 STATUS Calculated PCA coordinates | |
59 2013-07-04 12:57:50 STATUS Calculated MDS coordinates using manhattan distance | |
60 2013-07-04 12:57:50 STATUS Calculated MDS coordinates using euclidean distance | |
61 2013-07-04 12:57:50 WARNING Removed 30 loci ( promoters ) because they contain missing values | |
62 2013-07-04 12:57:50 STATUS Calculated PCA coordinates | |
63 2013-07-04 12:57:50 STATUS Calculated MDS coordinates using manhattan distance | |
64 2013-07-04 12:57:50 STATUS Calculated MDS coordinates using euclidean distance | |
65 2013-07-04 12:57:51 WARNING Removed 15 loci ( cpgislands ) because they contain missing values | |
66 2013-07-04 12:57:51 STATUS Calculated PCA coordinates | |
67 2013-07-04 12:57:51 STATUS Calculated MDS coordinates using manhattan distance | |
68 2013-07-04 12:57:51 STATUS Calculated MDS coordinates using euclidean distance | |
69 2013-07-04 12:57:51 INFO Mapping 2 traits to point colors and types | |
70 2013-07-04 13:14:59 INFO Principal components that explain at least 95 % of the total variance: 5 | |
71 2013-07-04 13:14:59 INFO Saved percentage of total variance to pca_variance_explained_1.csv | |
72 2013-07-04 13:15:03 INFO Principal components that explain at least 95 % of the total variance: 5 | |
73 2013-07-04 13:15:03 INFO Saved percentage of total variance to pca_variance_explained_2.csv | |
74 2013-07-04 13:15:08 INFO Principal components that explain at least 95 % of the total variance: 5 | |
75 2013-07-04 13:15:08 INFO Saved percentage of total variance to pca_variance_explained_3.csv | |
76 2013-07-04 13:15:12 INFO Principal components that explain at least 95 % of the total variance: 5 | |
77 2013-07-04 13:15:12 INFO Saved percentage of total variance to pca_variance_explained_4.csv | |
78 2013-07-04 13:15:16 INFO Principal components that explain at least 95 % of the total variance: 5 | |
79 2013-07-04 13:15:16 INFO Saved percentage of total variance to pca_variance_explained_5.csv | |
80 2013-07-04 13:15:20 STATUS Created scatter plots and CDFs summarizing the reduced dimensional representations | |
81 2013-07-04 13:15:20 STATUS COMPLETED Dimension Reduction Techniques | |
82 2013-07-04 13:15:20 STATUS STARTED Tests for Associations | |
83 2013-07-04 13:15:20 INFO Testing the following traits for associations: tumour site; tissue | |
84 2013-07-04 13:15:20 STATUS Computed correlations between principal components and traits. | |
85 2013-07-04 13:15:20 STATUS Computed pairwise correlations between traits. | |
86 2013-07-04 13:15:20 STATUS COMPLETED Tests for Associations | |
87 2013-07-04 13:15:48 STATUS STARTED Quality-associated Batch Effects | |
88 2013-07-04 13:15:48 WARNING No quality information available | |
89 2013-07-04 13:15:48 STATUS COMPLETED Quality-associated Batch Effects | |
90 2013-07-04 13:15:48 INFO Initialized report index and saved to index.html | |
91 2013-07-04 13:15:49 STATUS STARTED Methylation Profiles | |
92 2013-07-04 13:15:49 INFO Designed color mappings for probe type and CGI status | |
93 2013-07-04 13:15:57 STATUS STARTED Methylation Value Distributions - Sample Groups | |
94 2013-07-04 13:19:31 STATUS COMPLETED Methylation Value Distributions - Sample Groups | |
95 2013-07-04 13:19:31 STATUS STARTED Methylation Value Distributions - Probe Categories | |
96 2013-07-04 13:22:46 STATUS COMPLETED Methylation Value Distributions - Probe Categories | |
97 2013-07-04 13:22:47 STATUS STARTED Scatter Plots of Mean Beta vs Variance | |
98 2013-07-04 13:22:47 INFO Sample subgroups are defined by: tumour site; tissue | |
99 2013-07-04 13:22:48 WARNING Removed 10 loci with missing values in group all samples | |
100 2013-07-04 13:31:43 WARNING Removed 1448 loci with missing values in group base of tongue (based on tumour site) | |
101 2013-07-04 13:40:36 WARNING Removed 26 loci with missing values in group tonsil (based on tumour site) | |
102 2013-07-04 13:49:33 WARNING Removed 56 loci with missing values in group HPV+ HNSCC tumor (based on tissue) | |
103 2013-07-04 13:58:28 WARNING Removed 78 loci with missing values in group HPV- HNSCC tumor (based on tissue) | |
104 2013-07-04 14:07:20 STATUS Created 20 scatter plots of methylation variance on the site level | |
105 2013-07-04 14:07:21 WARNING Removed 1 loci with missing values in group all samples | |
106 2013-07-04 14:08:44 WARNING Removed 159 loci with missing values in group base of tongue (based on tumour site) | |
107 2013-07-04 14:10:05 WARNING Removed 2 loci with missing values in group tonsil (based on tumour site) | |
108 2013-07-04 14:11:26 WARNING Removed 4 loci with missing values in group HPV+ HNSCC tumor (based on tissue) | |
109 2013-07-04 14:12:48 WARNING Removed 7 loci with missing values in group HPV- HNSCC tumor (based on tissue) | |
110 2013-07-04 14:14:34 WARNING Removed 9 loci with missing values in group base of tongue (based on tumour site) | |
111 2013-07-04 14:16:42 WARNING Removed 8 loci with missing values in group base of tongue (based on tumour site) | |
112 2013-07-04 14:17:34 WARNING Removed 1 loci with missing values in group HPV+ HNSCC tumor (based on tissue) | |
113 2013-07-04 14:18:49 WARNING Removed 2 loci with missing values in group base of tongue (based on tumour site) | |
114 2013-07-04 14:20:26 STATUS Created 40 scatter plots of methylation variance on the region level | |
115 2013-07-04 14:20:26 STATUS COMPLETED Scatter Plots of Mean Beta vs Variance | |
116 2013-07-04 14:20:26 STATUS STARTED Deviation Plots | |
117 2013-07-04 14:49:08 STATUS Created 15 deviation plots on the site level | |
118 2013-07-04 15:04:01 STATUS Created 20 deviation plots on the region level | |
119 2013-07-04 15:04:02 STATUS Added summary table of variabilities | |
120 2013-07-04 15:04:02 STATUS COMPLETED Deviation Plots | |
121 2013-07-04 15:04:02 STATUS STARTED Sample Clustering | |
122 2013-07-04 15:04:02 STATUS STARTED Agglomerative Hierarchical Clustering | |
123 2013-07-04 15:04:02 STATUS Performed clustering on sites using correlation as a distance metric | |
124 2013-07-04 15:04:02 STATUS Performed clustering on sites using manhattan as a distance metric | |
125 2013-07-04 15:04:03 STATUS Performed clustering on sites using euclidean as a distance metric | |
126 2013-07-04 15:04:03 STATUS Performed clustering on tiling using correlation as a distance metric | |
127 2013-07-04 15:04:03 STATUS Performed clustering on tiling using manhattan as a distance metric | |
128 2013-07-04 15:04:03 STATUS Performed clustering on tiling using euclidean as a distance metric | |
129 2013-07-04 15:04:03 STATUS Completed clustering for tiling | |
130 2013-07-04 15:04:03 STATUS Performed clustering on genes using correlation as a distance metric | |
131 2013-07-04 15:04:03 STATUS Performed clustering on genes using manhattan as a distance metric | |
132 2013-07-04 15:04:03 STATUS Performed clustering on genes using euclidean as a distance metric | |
133 2013-07-04 15:04:03 STATUS Completed clustering for genes | |
134 2013-07-04 15:04:03 STATUS Performed clustering on promoters using correlation as a distance metric | |
135 2013-07-04 15:04:03 STATUS Performed clustering on promoters using manhattan as a distance metric | |
136 2013-07-04 15:04:03 STATUS Performed clustering on promoters using euclidean as a distance metric | |
137 2013-07-04 15:04:03 STATUS Completed clustering for promoters | |
138 2013-07-04 15:04:03 STATUS Performed clustering on cpgislands using correlation as a distance metric | |
139 2013-07-04 15:04:03 STATUS Performed clustering on cpgislands using manhattan as a distance metric | |
140 2013-07-04 15:04:04 STATUS Performed clustering on cpgislands using euclidean as a distance metric | |
141 2013-07-04 15:04:04 STATUS Completed clustering for cpgislands | |
142 2013-07-04 15:04:04 STATUS COMPLETED Agglomerative Hierarchical Clustering | |
143 2013-07-04 15:04:04 STATUS STARTED Clustering Section | |
144 2013-07-04 15:04:05 STATUS STARTED Generating Heatmaps | |
145 2013-07-04 15:04:05 STATUS STARTED Region type: sites | |
146 2013-07-04 15:12:40 STATUS COMPLETED Region type: sites | |
147 2013-07-04 15:12:40 STATUS STARTED Region type: tiling | |
148 2013-07-04 15:21:19 STATUS COMPLETED Region type: tiling | |
149 2013-07-04 15:21:19 STATUS STARTED Region type: genes | |
150 2013-07-04 15:29:56 STATUS COMPLETED Region type: genes | |
151 2013-07-04 15:29:56 STATUS STARTED Region type: promoters | |
152 2013-07-04 15:38:33 STATUS COMPLETED Region type: promoters | |
153 2013-07-04 15:38:33 STATUS STARTED Region type: cpgislands | |
154 2013-07-04 15:47:09 STATUS COMPLETED Region type: cpgislands | |
155 2013-07-04 15:47:10 STATUS Created 360 heatmaps based on the clustering results | |
156 2013-07-04 15:47:10 STATUS COMPLETED Generating Heatmaps | |
157 2013-07-04 15:47:10 STATUS STARTED Adding Color Legends | |
158 2013-07-04 15:50:15 STATUS COMPLETED Adding Color Legends | |
159 2013-07-04 15:50:15 STATUS STARTED Estimating Optimal Numbers of Clusters | |
160 2013-07-04 15:51:21 STATUS Estimated number of clusters based on mean silhouette value | |
161 2013-07-04 15:51:21 STATUS COMPLETED Estimating Optimal Numbers of Clusters | |
162 2013-07-04 15:51:21 STATUS STARTED Overlapping Clusters with Sample Traits | |
163 2013-07-04 15:51:21 STATUS Computed adjusted rand indices and saved to profiles_data/adjusted_rand_indices_1.csv | |
164 2013-07-04 15:51:21 STATUS Computed adjusted rand indices and saved to profiles_data/adjusted_rand_indices_2.csv | |
165 2013-07-04 15:51:21 STATUS Computed adjusted rand indices and saved to profiles_data/adjusted_rand_indices_3.csv | |
166 2013-07-04 15:51:21 STATUS Computed adjusted rand indices and saved to profiles_data/adjusted_rand_indices_4.csv | |
167 2013-07-04 15:51:21 STATUS Computed adjusted rand indices and saved to profiles_data/adjusted_rand_indices_5.csv | |
168 2013-07-04 15:52:26 STATUS COMPLETED Overlapping Clusters with Sample Traits | |
169 2013-07-04 15:52:26 STATUS COMPLETED Clustering Section | |
170 2013-07-04 15:52:26 STATUS COMPLETED Sample Clustering | |
171 2013-07-04 15:52:26 STATUS STARTED Regional Methylation Profiling | |
172 2013-07-04 15:52:26 STATUS STARTED Computing Regional Profiles Based on Binning | |
173 2013-07-04 15:52:26 STATUS STARTED Processing Region Type: genes | |
174 2013-07-04 16:03:01 STATUS Set region annotation and site membership | |
175 2013-07-04 16:04:02 STATUS Computed binned methylation values | |
176 2013-07-04 16:04:02 STATUS COMPLETED Processing Region Type: genes | |
177 2013-07-04 16:04:02 STATUS STARTED Processing Region Type: promoters | |
178 2013-07-04 16:14:38 STATUS Set region annotation and site membership | |
179 2013-07-04 16:15:29 STATUS Computed binned methylation values | |
180 2013-07-04 16:15:29 STATUS COMPLETED Processing Region Type: promoters | |
181 2013-07-04 16:15:29 STATUS STARTED Processing Region Type: cpgislands | |
182 2013-07-04 16:25:46 STATUS Set region annotation and site membership | |
183 2013-07-04 16:26:38 STATUS Computed binned methylation values | |
184 2013-07-04 16:26:38 STATUS COMPLETED Processing Region Type: cpgislands | |
185 2013-07-04 16:26:38 STATUS COMPLETED Computing Regional Profiles Based on Binning | |
186 2013-07-04 16:26:38 STATUS STARTED Creating a Corresponding Section in the Report | |
187 2013-07-04 16:26:38 STATUS Plotting region profiles for region genes and column tumour site ... | |
188 2013-07-04 16:28:31 STATUS Plotting region profiles for region genes and column tissue ... | |
189 2013-07-04 16:29:44 STATUS Plotting region profiles for region promoters and column tumour site ... | |
190 2013-07-04 16:30:31 STATUS Plotting region profiles for region promoters and column tissue ... | |
191 2013-07-04 16:31:15 STATUS Plotting region profiles for region cpgislands and column tumour site ... | |
192 2013-07-04 16:32:16 STATUS Plotting region profiles for region cpgislands and column tissue ... | |
193 2013-07-04 16:33:13 STATUS COMPLETED Creating a Corresponding Section in the Report | |
194 2013-07-04 16:33:13 STATUS COMPLETED Regional Methylation Profiling | |
195 2013-07-04 16:33:13 STATUS COMPLETED Methylation Profiles | |
196 2013-07-04 16:33:13 INFO Initialized report index and saved to index.html | |
197 2013-07-04 16:33:14 STATUS STARTED Differential Methylation - Analysis | |
198 2013-07-04 16:33:14 INFO Using 0 permutation tests | |
199 2013-07-04 16:33:14 INFO Using columns: title,geo_accession,status,submission_date,last_update_date,type,channel_count,source_name_ch1,organism_ch1,molecule_ch1,extract_protocol_ch1,label_ch1,label_protocol_ch1,taxid_ch1,hyb_protocol,scan_protocol,description,data_processing,platform_id,contact_name,contact_email,contact_laboratory,contact_department,contact_institute,contact_address,contact_city,contact_zip/postal_code,contact_country,supplementary_file,data_row_count,tumour site,tissue | |
200 2013-07-04 16:33:14 INFO Using region types: tiling,genes,promoters,cpgislands | |
201 2013-07-04 16:33:14 STATUS STARTED Comparison Information: tumour site | |
202 2013-07-04 16:33:14 STATUS STARTED Comparing base of tongue-tonsil | |
203 2013-07-04 16:33:14 STATUS STARTED Computing Differential Methylation Table (Site Level) | |
204 2013-07-04 16:33:21 INFO Some t-test p-values are NA. They are treated as 1 in FDR adjustment | |
205 2013-07-04 16:33:28 STATUS COMPLETED Computing Differential Methylation Table (Site Level) | |
206 2013-07-04 16:33:28 STATUS STARTED Computing Differential Methylation Tables (Region Level) | |
207 2013-07-04 16:45:21 INFO Some p-values are NA. They are treated as 1 in FDR adjustment | |
208 2013-07-04 16:45:21 STATUS Computed table for tiling | |
209 2013-07-04 16:48:07 INFO Some p-values are NA. They are treated as 1 in FDR adjustment | |
210 2013-07-04 16:48:07 STATUS Computed table for genes | |
211 2013-07-04 16:50:48 INFO Some p-values are NA. They are treated as 1 in FDR adjustment | |
212 2013-07-04 16:50:48 STATUS Computed table for promoters | |
213 2013-07-04 16:53:07 INFO Some p-values are NA. They are treated as 1 in FDR adjustment | |
214 2013-07-04 16:53:07 STATUS Computed table for cpgislands | |
215 2013-07-04 16:53:07 STATUS COMPLETED Computing Differential Methylation Tables (Region Level) | |
216 2013-07-04 16:53:07 STATUS COMPLETED Comparing base of tongue-tonsil | |
217 2013-07-04 16:53:07 STATUS COMPLETED Comparison Information: tumour site | |
218 2013-07-04 16:53:07 STATUS STARTED Comparison Information: tissue | |
219 2013-07-04 16:53:07 STATUS STARTED Comparing HPV+ HNSCC tumor-HPV- HNSCC tumor | |
220 2013-07-04 16:53:07 STATUS STARTED Computing Differential Methylation Table (Site Level) | |
221 2013-07-04 16:53:12 INFO Some t-test p-values are NA. They are treated as 1 in FDR adjustment | |
222 2013-07-04 16:53:17 STATUS COMPLETED Computing Differential Methylation Table (Site Level) | |
223 2013-07-04 16:53:17 STATUS STARTED Computing Differential Methylation Tables (Region Level) | |
224 2013-07-04 17:04:12 INFO Some p-values are NA. They are treated as 1 in FDR adjustment | |
225 2013-07-04 17:04:13 STATUS Computed table for tiling | |
226 2013-07-04 17:06:56 STATUS Computed table for genes | |
227 2013-07-04 17:09:29 INFO Some p-values are NA. They are treated as 1 in FDR adjustment | |
228 2013-07-04 17:09:29 STATUS Computed table for promoters | |
229 2013-07-04 17:11:43 STATUS Computed table for cpgislands | |
230 2013-07-04 17:11:43 STATUS COMPLETED Computing Differential Methylation Tables (Region Level) | |
231 2013-07-04 17:11:43 STATUS COMPLETED Comparing HPV+ HNSCC tumor-HPV- HNSCC tumor | |
232 2013-07-04 17:11:43 STATUS COMPLETED Comparison Information: tissue | |
233 2013-07-04 17:11:43 INFO Skipping enrichment analysis of differentially methylated regions | |
234 2013-07-04 17:11:43 STATUS COMPLETED Differential Methylation - Analysis | |
235 2013-07-04 17:11:43 STATUS STARTED Differential Methylation - Report Generation | |
236 2013-07-04 17:11:43 STATUS Added introductory section | |
237 2013-07-04 17:11:43 STATUS STARTED Adding Site Level Information | |
238 2013-07-04 18:03:20 STATUS COMPLETED Adding Site Level Information | |
239 2013-07-04 18:03:20 STATUS STARTED Adding Region Level Information | |
240 2013-07-04 18:31:24 STATUS COMPLETED Adding Region Level Information | |
241 2013-07-04 18:31:24 STATUS COMPLETED Differential Methylation - Report Generation | |
242 2013-07-04 18:31:25 INFO Initialized report index and saved to index.html | |
243 2013-07-04 18:31:25 STATUS STARTED Data Export | |
244 2013-07-04 18:31:25 STATUS STARTED Exporting RnBSet | |
245 2013-07-04 18:31:25 STATUS STARTED Exporting sites | |
246 2013-07-04 18:31:25 STATUS STARTED Creating UCSC Track Hub -- bigBed | |
247 2013-07-04 18:31:25 STATUS STARTED Conversion to BED | |
248 2013-07-04 18:33:46 STATUS COMPLETED Conversion to BED | |
249 2013-07-04 18:33:46 STATUS STARTED Creating UCSC Track Hub | |
250 2013-07-04 18:34:06 STATUS COMPLETED Creating UCSC Track Hub | |
251 2013-07-04 18:34:06 STATUS COMPLETED Creating UCSC Track Hub -- bigBed | |
252 2013-07-04 18:34:06 STATUS STARTED Creating UCSC Track Hub -- bigWig | |
253 2013-07-04 18:34:06 STATUS STARTED Conversion to bedGraph | |
254 2013-07-04 18:36:10 STATUS COMPLETED Conversion to bedGraph | |
255 2013-07-04 18:36:10 STATUS STARTED Creating UCSC Track Hub | |
256 2013-07-04 18:36:28 STATUS COMPLETED Creating UCSC Track Hub | |
257 2013-07-04 18:36:28 STATUS COMPLETED Creating UCSC Track Hub -- bigWig | |
258 2013-07-04 18:36:28 STATUS COMPLETED Exporting sites | |
259 2013-07-04 18:36:28 STATUS COMPLETED Exporting RnBSet | |
260 2013-07-04 18:36:28 STATUS STARTED Writing export report | |
261 2013-07-04 18:36:28 STATUS COMPLETED Writing export report | |
262 2013-07-04 18:36:28 STATUS COMPLETED Data Export | |
263 2013-07-04 18:36:28 INFO Initialized report index and saved to index.html | |
264 2013-07-04 18:36:29 STATUS COMPLETED RnBeads Pipeline | |
265 |