Mercurial > repos > pcingola > snpeff

diff snpEff_2_1a/snpEff_2_1a/scripts/snpEffXL.sh @ 3:c052639fa666 default tip

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author pcingola
date Fri, 20 Apr 2012 11:22:59 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpEff_2_1a/snpEff_2_1a/scripts/snpEffXL.sh	Fri Apr 20 11:22:59 2012 -0400
@@ -0,0 +1,9 @@
+#!/bin/sh
+
+DIR=$HOME/snpEff/
+LIB=$HOME/snpEff/lib
+
+java -Xmx20G \
+	-classpath "$LIB/charts4j-1.2.jar:$LIB/flanagan.jar:$LIB/freemarker.jar:$LIB/junit.jar:$LIB/trove-3.0.2.jar:$LIB/akka-actor-2.0-M4.jar:$LIB/scala-library.jar:$DIR" \
+	ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff \
+	$*