Mercurial > repos > pcingola > snpeff
directory /snpEff_2_1a/snpEff_2_1a/scripts/ @ 3:c052639fa666 default tip
name | size | permissions |
---|---|---|
[up] | drwxr-xr-x | |
data/ | drwxr-xr-x | |
._bam2fastq.pl | 170 | -rwxr-xr-x |
._buildTestCases.sh | 170 | -rwxr-xr-x |
._build_regulation.sh | 170 | -rwxr-xr-x |
._compareToEnsembl.sh | 170 | -rwxr-xr-x |
._distro.sh | 170 | -rwxr-xr-x |
._download.sh | 170 | -rwxr-xr-x |
._fasta2tab.pl | 170 | -rwxr-xr-x |
._fastaSample.pl | 170 | -rwxr-xr-x |
._fastaSplit.pl | 170 | -rwxr-xr-x |
._file2GenomeName.pl | 170 | -rwxr-xr-x |
._filterOutBoringPredictions.sh | 170 | -rwxr-xr-x |
._filterOutBoringPredictionsVcf.sh | 170 | -rwxr-xr-x |
._genesTxtColumnNames.sh | 170 | -rw-r--r-- |
._hist.pl | 170 | -rwxr-xr-x |
._joinSnpEff.pl | 170 | -rwxr-xr-x |
._nOutOfM.pl | 170 | -rw-r--r-- |
._promoterSequences.sh | 170 | -rwxr-xr-x |
._proteinFasta2NM.pl | 170 | -rwxr-xr-x |
._qqplot.pl | 170 | -rwxr-xr-x |
._queue.pl | 170 | -rwxr-xr-x |
._queue_build.sh | 170 | -rwxr-xr-x |
._queue_build.txt | 170 | -rw-r--r-- |
._queue_build_regulation.txt | 170 | -rw-r--r-- |
._queue_dump.txt | 170 | -rw-r--r-- |
._queue_test.sh | 170 | -rwxr-xr-x |
._queue_test.txt | 170 | -rw-r--r-- |
._randBedIntervals.pl | 170 | -rwxr-xr-x |
._sift2vcf.pl | 170 | -rwxr-xr-x |
._sift2vcf.sh | 170 | -rwxr-xr-x |
._smoothScatter.pl | 170 | -rwxr-xr-x |
._snpEff.sh | 170 | -rwxr-xr-x |
._snpEffM.sh | 170 | -rwxr-xr-x |
._snpEffXL.sh | 170 | -rwxr-xr-x |
._snpSift.sh | 170 | -rwxr-xr-x |
._test.Broad_NS_SYN.sh | 170 | -rwxr-xr-x |
._uniqCount.pl | 170 | -rw-r--r-- |
._vcfEffOnePerLine.pl | 170 | -rwxr-xr-x |
._vcfSpeedTest.sh | 170 | -rwxr-xr-x |
bam2fastq.pl | 115 | -rwxr-xr-x |
buildTestCases.sh | 458 | -rwxr-xr-x |
build_regulation.sh | 68 | -rwxr-xr-x |
compareToEnsembl.sh | 238 | -rwxr-xr-x |
distro.sh | 1173 | -rwxr-xr-x |
download.sh | 2740 | -rwxr-xr-x |
fasta2tab.pl | 773 | -rwxr-xr-x |
fastaSample.pl | 797 | -rwxr-xr-x |
fastaSplit.pl | 1100 | -rwxr-xr-x |
file2GenomeName.pl | 621 | -rwxr-xr-x |
filterOutBoringPredictions.sh | 252 | -rwxr-xr-x |
filterOutBoringPredictionsVcf.sh | 259 | -rwxr-xr-x |
genesTxtColumnNames.sh | 1024 | -rw-r--r-- |
hist.pl | 2252 | -rwxr-xr-x |
joinSnpEff.pl | 3482 | -rwxr-xr-x |
nOutOfM.pl | 285 | -rw-r--r-- |
promoterSequences.sh | 229 | -rwxr-xr-x |
proteinFasta2NM.pl | 1149 | -rwxr-xr-x |
qqplot.pl | 1978 | -rwxr-xr-x |
queue.pl | 4084 | -rwxr-xr-x |
queue_build.sh | 65 | -rwxr-xr-x |
queue_build.txt | 18418 | -rw-r--r-- |
queue_build_regulation.txt | 5817 | -rw-r--r-- |
queue_dump.txt | 7421 | -rw-r--r-- |
queue_test.sh | 64 | -rwxr-xr-x |
queue_test.txt | 15255 | -rw-r--r-- |
randBedIntervals.pl | 775 | -rwxr-xr-x |
sift2vcf.pl | 770 | -rwxr-xr-x |
sift2vcf.sh | 1430 | -rwxr-xr-x |
smoothScatter.pl | 2141 | -rwxr-xr-x |
snpEff.sh | 291 | -rwxr-xr-x |
snpEffM.sh | 290 | -rwxr-xr-x |
snpEffXL.sh | 292 | -rwxr-xr-x |
snpSift.sh | 590 | -rwxr-xr-x |
test.Broad_NS_SYN.sh | 887 | -rwxr-xr-x |
uniqCount.pl | 198 | -rw-r--r-- |
vcfEffOnePerLine.pl | 1450 | -rwxr-xr-x |
vcfSpeedTest.sh | 116 | -rwxr-xr-x |