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view snpEff_2_1a/snpEff_2_1a/scripts/filterOutBoringPredictionsVcf.sh @ 3:c052639fa666 default tip

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author pcingola
date Fri, 20 Apr 2012 11:22:59 -0400
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#!/bin/sh

# Keep interesting predictions
java -jar $HOME/tools/VcfEtc.jar filter \
       "( EFF =~ 'NON_SYN' ) | ( EFF =~ 'CODON') | ( EFF =~ 'SPLICE') | ( EFF =~ 'STOP') | ( EFF =~ 'START') | ( EFF =~ 'FRAME') | ( EFF =~ 'LOST') | ( EFF =~ 'DELETED' )" \