Mercurial > repos > pcingola > snpeff
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| author | pcingola |
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| date | Fri, 20 Apr 2012 11:22:59 -0400 |
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#------------------------------------------------------------------------------- # # SnpEff configuration file # # Pablo Cingolani #------------------------------------------------------------------------------- #--- # Databases are stored here # E.g.: Information for 'hg19' is stored in data_dir/hg19/ # # Note: Since version 2.1 you can use tilde ('~') as first character to refer to your home directory #--- data_dir = ~/snpEff/data/ #--- # Database repository: A URL to the server where you can download databases (command: 'snpEff download dbName') #--- database_repository = http://downloads.sourceforge.net/project/snpeff/databases #------------------------------------------------------------------------------- # Genomes # # One entry per genome version. # # For genome version 'ZZZ' the entries look like # ZZZ.genome : Real name for ZZZ (e.g. 'Human') # ZZZ.reference : [Optional] Comma separated list of URL to site/s where information for building ZZZ database was extracted. # ZZZ.chrName.codonTable : [Optional] Define codon table used for chromosome 'chrName' (Default: 'codon.Standard') # #------------------------------------------------------------------------------- # Ailuropoda_melanoleuca ailmel1.61.genome : Ailuropoda_melanoleuca # Anopheles_gambiae agam.genome : Anopheles_gambiae agam.reference : http://agambiae.vectorbase.org/GetData/ agam2.6.genome : Anopheles_gambiae agam2.6.reference : http://agambiae.vectorbase.org/GetData/ # Arabidopsis lyrata alyrata107.genome : Arabidopsis_lyrata alyrata107.reference : http://www.phytozome.net/search.php?method=Org_Alyrata alyrata1.genome : Arabidopsis_lyrata alyrata1.reference : http://genome.jgi-psf.org/Araly1/Araly1.download.ftp.html # Apis mellifera amel2.genome : Bee amel2.reference : http://beebase.org # Anolis carolinensis genes (AnoCar1.0) (ENSEMBL) anoCar1.0.60.genome : Anolis_carolinensis anoCar2.0.61.genome : Anolis_carolinensis # Aquilegia coerulea aquiCoer.genome : Aquilegia_coerulea # Arabidopsis Thaliana athaliana130.genome : Arabidopsis_Thaliana athaliana130.reference : http://www.phytozome.net/dataUsagePolicy.php?org=Org_Athaliana athalianaTair9.genome : Arabidopsis_Thaliana athalianaTair9.reference : ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR9_genome_release athalianaTair10.genome : Arabidopsis_Thaliana athalianaTair10.reference : ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR10_genome_release # Bos taurus genes (Btau_4.0) (ENSEMBL) btau4.0.59.genome : Bos_taurus btau4.0.60.genome : Bos_taurus btau4.0.61.genome : Bos_taurus # Otolemur garnettii genes (otoGar1) (ENSEMBL) bushBaby1.60.genome : Otolemur_garnettii bushBaby1.61.genome : Otolemur_garnettii # Candida_albicans_SC5314 cAlbicansv21.genome: Candida_albicans_SC5314 cAlbicansv21.reference: http://www.candidagenome.org/download/gff/C_albicans_SC5314/ # C. Briggsae c_briggsae_WS230.genome : Caenorhabditis_briggsae c_briggsae_WS230.reference : ftp://ftp.wormbase.org/pub/wormbase/releases/WS230/species/c_briggsae/ # Cryptococcus neoformans c_neoformans.genome: Cryptococcus_neoformans c_neoformans.reference: http://www.broadinstitute.org/annotation/genome/cryptococcus_neoformans/MultiDownloads.html # Callithrix jacchus genes (calJac3) (ENSEMBL) calJac3.2.1.60.genome : Callithrix_jacchus calJac3.2.1.61.genome : Callithrix_jacchus # Canis familiaris genes (CanFam_2.0) (ENSEMBL) canFam2.59.genome : Canis_familiaris canFam2.60.genome : Canis_familiaris canFam2.61.genome : Canis_familiaris # Felis catus genes (CAT) (ENSEMBL) cat1.60.genome : Felis_catus cat1.61.genome : Felis_catus # Cavia porcellus genes (cavPor3) (ENSEMBL) cavPor3.60.genome : Cavia_porcellus cavPor3.61.genome : Cavia_porcellus # Caenorhabditis elegans genes (WS210) (ENSEMBL) ce.WS201.genome : Caenorhabditis_elegans ce.WS210.60.genome : Caenorhabditis_elegans ce.WS220.61.genome : Caenorhabditis_elegans # Pan troglodytes genes (CHIMP2.1) (ENSEMBL) chimp2.1.59.genome : Pan_troglodytes chimp2.1.60.genome : Pan_troglodytes chimp2.1.61.genome : Pan_troglodytes # Choloepus hoffmanni genes (choHof1) (ENSEMBL) choHof1.60.genome : Choloepus_hoffmanni choHof1.61.genome : Choloepus_hoffmanni # Ciona intestinalis genes (JGI2) (ENSEMBL) cInt2.60.genome : Ciona_intestinalis cInt2.61.genome : Ciona_intestinalis # CP000730 CP000730.genome : Staphylococcus_aureus CP000730.reference : http://www.ncbi.nlm.nih.gov/nuccore/CP000730.1 # Capsella_rubella_v1.0 (Toronto University, Grandiflora) crubella.genome : Capsella_rubella_v1.0 # Ciona savignyi genes (CSAV2.0) (ENSEMBL) cSav2.0.60.genome : Ciona_savignyi cSav2.0.61.genome : Ciona_savignyi # Danio rerio genes (Zv9) (ENSEMBL) danRer8.59.genome : Danio_rerio danRer9.60.genome : Danio_rerio danRer9.61.genome : Danio_rerio # Dasypus novemcinctus genes (dasNov2) (ENSEMBL) dasNov2.60.genome : Dasypus_novemcinctus dasNov2.61.genome : Dasypus_novemcinctus # Dipodomys ordii genes (dipOrd1) (ENSEMBL) dipOrd1.60.genome : Dipodomys_ordii dipOrd1.61.genome : Dipodomys_ordii # Drosophila melanogaster (ENSEMBL) dm5.25.59.genome : Drosophila_melanogaster dm5.25.60.genome : Drosophila_melanogaster dm5.25.61.genome : Drosophila_melanogaster dm5.25.63.genome : Drosophila_melanogaster # Drosophila melanogaster (FlyBase) dm5.12.genome : Drosophila_melanogaster dm5.22.genome : Drosophila_melanogaster dm5.30.genome : Drosophila_melanogaster dm5.31.genome : Drosophila_melanogaster dm5.32.genome : Drosophila_melanogaster dm5.34.genome : Drosophila_melanogaster dm5.40.genome : Drosophila_melanogaster dm5.42.genome : Drosophila_melanogaster # Equus caballus genes (EquCab2) (ENSEMBL) equCab2.60.genome : Equus_caballus equCab2.61.genome : Equus_caballus # Erinaceus europaeus genes (eriEur1) (ENSEMBL) eriEur1.60.genome : Erinaceus_europaeus eriEur1.61.genome : Erinaceus_europaeus # Takifugu rubripes genes (FUGU4.0) (ENSEMBL) fugu4.60.genome : Takifugu_rubripes fugu4.61.genome : Takifugu_rubripes # Gasterosteus aculeatus genes (BROADS1) (ENSEMBL) gacu1.60.genome : Gasterosteus_aculeatus gacu1.61.genome : Gasterosteus_aculeatus # Gallus gallus genes (WASHUC2) (ENSEMBL) ggallus2.59.genome : Gallus_gallus ggallus2.60.genome : Gallus_gallus ggallus2.61.genome : Gallus_gallus # Glycine max gmax1.09.genome: Glycine_Max gmax1.09.reference: ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v7.0/Gmax/ gmax1.09v8.genome: Glycine_Max gmax1.09v8.reference: ftp://ftp.jgi-psf.org/pub/JGI_data/phytozome/v8.0/Gmax/ # Gorilla gorilla genes (gorGor3) (ENSEMBL) gorGor3.60.genome : Gorilla_gorilla gorGor3.61.genome : Gorilla_gorilla # Human herpesvirus 1, complete genome. NCBI Reference Sequence: NC_001806.1 herpesvirus1.genome: Herpesvirus # Homo sapiens genes (GRCh37.p2) (ENSEMBL) hg36.54.genome : Homo_sapiens hg37.59.genome : Homo_sapiens hg37.60.genome : Homo_sapiens hg37.61.genome : Homo_sapiens hg37.63.genome : Homo_sapiens # Homo sapiens (hg19) (UCSC) hg19.genome : Homo_sapiens hg19.reference : http://hgdownload.cse.ucsc.edu \ # Gene information from 'table' download , http://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz \ # Genome sequence , ftp://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/mRNA_Prot/human.protein.faa.gz \ # Protein , ftp://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/mRNA_Prot/human.rna.fna.gz \ # CDS , http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/refLink.txt.gz # Reflink # HIV_nc_001802_1 hiv.genome : HIV # Grosmannia clavigera kw1407.2012.genome: Grosmannia_clavigera # Leishmania genome lmjf4.genome : LmajorFriedlin # Loxodonta africana genes (loxAfr3) (ENSEMBL) loxAfr3.60.genome : Loxodonta_africana loxAfr3.61.genome : Loxodonta_africana # Mycobacterium tuberculosis m_tuberculosis.genome : Mycobacterium_tuberculosis m_tuberculosis.reference : ftp://ftp.sanger.ac.uk/pub/pathogens/Mycobacterium/tuberculosis/ # Neurospora Crassa ncrassa.genome : Neurospora_Crassa ncrassa.reference : http://www.broadinstitute.org/annotation/genome/neurospora/MultiDownloads.html # Ecoli K12 MG1655 NC_000913.genome : Escherichia_coli # Clostridium difficile NC_009089.1.genome : Clostridium_difficile # Maize maizeZmB73.genome : Maize_ZmB73 maizeZmB73.reference : http://ftp.maizesequence.org/ # Oryzias latipes genes (HdrR) (ENSEMBL) medaka1.60.genome : Oryzias_latipes medaka1.61.genome : Oryzias_latipes # Macropus eugenii genes (Meug_1.0) (ENSEMBL) meug1.0.60.genome : Macropus_eugenii meug1.0.61.genome : Macropus_eugenii # Microcebus murinus genes (micMur1) (ENSEMBL) micMur1.60.genome : Microcebus_murinus micMur1.61.genome : Microcebus_murinus # Mus musculus genes (NCBIM37) (ENSEMBL) mm37.genome : Mus_musculus mm37.59.genome : Mus_musculus mm37.60.genome : Mus_musculus mm37.61.genome : Mus_musculus # Macaca mulatta genes (MMUL_1.0) (ENSEMBL) mmul1.60.genome : Macaca_mulatta mmul1.61.genome : Macaca_mulatta # Mycobacterium marinum M strain genome, version 31012012 mmm.2012.genome : Mycobacterium_marinum_M # Monodelphis domestica genes (monDom5) (ENSEMBL) monDom5.60.genome : Monodelphis_domestica monDom5.61.genome : Monodelphis_domestica # Mycoplasma pneumoninae FH myco_fh.genome : Mycoplasma_pneumoninae_FH # Mycoplasma pneumoninae M129 myco_m129.genome : Mycoplasma_pneumoninae_M129 # Myotis lucifugus genes (myoLuc1) (ENSEMBL) myoLuc1.60.genome : Myotis_lucifugus myoLuc1.61.genome : Myotis_lucifugus # Ornithorhynchus anatinus genes (OANA5) (ENSEMBL) oana5.60.genome : Ornithorhynchus_anatinus oana5.61.genome : Ornithorhynchus_anatinus # Ochotona princeps genes (OchPri2.0) (ENSEMBL) ochPri2.60.genome : Ochotona_princeps ochPri2.61.genome : Ochotona_princeps # Oryctolagus cuniculus genes (oryCun2.0) (ENSEMBL) oryCun2.60.genome : Oryctolagus_cuniculus oryCun2.61.genome : Oryctolagus_cuniculus # Pseudomonas aeruginosa, N_008463 paeru.PA01.genome : Pseudomonas_aeruginosa paeru.PA01.chromosomes : NC_002516.2 paeru.PA01.NC_002516.2.codonTable: Bacterial_and_Plant_Plastid # Pseudomonas aeruginosa, N_008463 paeru.PA14.genome : Pseudomonas_aeruginosa paeru.PA14.chromosomes : NC_008463.1 paeru.PA14.NC_008463.1.codonTable: Bacterial_and_Plant_Plastid # Peromyscus leucopus (white footed deer mice) peromyscus.genome : Peromyscus leucopus # Plasmodium falciparum plasmo72.genome: Plasmodium_falciparum plasmo72.reference: http://plasmodb.org/common/downloads/release-7.2/Pfalciparum/ # Peach (Prunus persica). ppersica139.genome : Peach ppersica139.reference : ftp://ftp.plantgdb.org/download/Genomes/PeGDB/ # Pseudomonas fluorescens pfluo.SBW25.NC_009444.genome : Pseudomonas_fluorescens pfluo.SBW25.NC_009444.chromosomes : NC_009444.1 pfluo.SBW25.NC_009444.NC_009444.1.codonTable: Bacterial_and_Plant_Plastid # Pseudomonas fluorescens pfluo.SBW25.NC_012660.genome : Pseudomonas_fluorescens pfluo.SBW25.NC_012660.chromosomes : NC_012660.1 pfluo.SBW25.NC_012660.NC_012660.1.codonTable: Bacterial_and_Plant_Plastid # Pongo pygmaeus abelii genes (PPYG2) (ENSEMBL) ppyg2.60.genome : Pongo_pygmaeus ppyg2.61.genome : Pongo_pygmaeus # Procavia capensis genes (proCap1) (ENSEMBL) proCap1.60.genome : Procavia_capensis proCap1.61.genome : Procavia_capensis # Pteropus vampyrus genes (pteVam1) (ENSEMBL) pteVam1.60.genome : Pteropus_vampyrus pteVam1.61.genome : Pteropus_vampyrus # Rattus norvegicus genes (RGSC3.4) (ENSEMBL) rat3.4.59.genome : Rattus_norvegicus rat3.4.60.genome : Rattus_norvegicus rat3.4.61.genome : Rattus_norvegicus # Rice: http://rapdb.dna.affrc.go.jp/download/index.html rice5.genome: Rice rice5.reference: http://rapdb.dna.affrc.go.jp/download/index.html rice6.1.genome: Rice rice6.1.reference: ftp://ftp.plantbiology.msu.edu,ftp://ftp.plantbiology.msu.edu/pub/data/Eukaryotic_Projects/o_sativa/annotation_dbs/ # Saccharomyces cerevisiae genes (SGD1.01) (ENSEMBL) sacCer2.genome : Saccharomyces_cerevisiae sacCer2.59.genome : Saccharomyces_cerevisiae sacCer2.60.genome : Saccharomyces_cerevisiae sacCer2.61.genome : Saccharomyces_cerevisiae # SCU49845 SCU49845.genome : SCU49845 # HIV virus SIVmac239.genome : HIV SIVmac239.reference : http://www.ncbi.nlm.nih.gov/nuccore/334647 # Tomato SL2.40.genome : Tomato SL2.40.reference : ftp://ftp.solgenomics.net/,ftp://ftp.solgenomics.net/genomes/Solanum_lycopersicum/wgs/assembly/build_2.40/S_lycopersicum_chromosomes.2.40.fa.gz,http://solgenomics.net/itag/release/2.3/list_files(ITAG2.3_gene_models.gff3) # Sorex araneus genes (sorAra1) (ENSEMBL) sorAra1.60.genome : Sorex_araneus sorAra1.61.genome : Sorex_araneus # Spermophilus tridecemlineatus genes (speTri1) (ENSEMBL) speTri1.60.genome : Spermophilus_tridecemlineatus speTri1.61.genome : Spermophilus_tridecemlineatus # Schizosaccharomyces pombe (fission yeast). spombe.genome : Schizosaccharomyces_pombe spombe.reference : ftp://ftp.sanger.ac.uk/pub/yeast/pombe/GFF # Sus scrofa genes (Sscrofa9) (ENSEMBL) sScrofa9.60.genome : Sus_scrofa sScrofa9.61.genome : Sus_scrofa # Taeniopygia guttata genes (taeGut3.2.4) (ENSEMBL) taeGut3.2.4.60.genome : Taeniopygia_guttata taeGut3.2.4.61.genome : Taeniopygia_guttata # Tarsius syrichta genes (tarSyr1) (ENSEMBL) tarSyr1.60.genome : Tarsius_syrichta tarSyr1.61.genome : Tarsius_syrichta # Echinops telfairi genes (TENREC) (ENSEMBL) tenrec1.60.genome : Echinops_telfairi tenrec1.61.genome : Echinops_telfairi # Used for debugging test.genome : TestCase testHg3761Chr15.genome : TestCase testHg3761Chr16.genome : TestCase testHg3763Chr1.genome : TestCase testHg3763Chr20.genome : TestCase testHg3763ChrY.genome : TestCase testHg3765Chr22.genome : TestCase testCase.genome : TestCase testCaseHg.chromosomes: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, X, Y test_ENSG00000158062.genome : TestCase # Tetraodon nigroviridis genes (TETRAODON8.0) (ENSEMBL) tetraodon8.60.genome : Tetraodon_nigroviridis tetraodon8.61.genome : Tetraodon_nigroviridis # Tupaia belangeri genes (tupBel1) (ENSEMBL) tupBel1.60.genome : Tupaia_belangeri tupBel1.61.genome : Tupaia_belangeri # Meleagris_gallopavo (Turkey) turkey.UMD2.61.genome : Meleagris_gallopavo # Tursiops truncatus genes (turTru1) (ENSEMBL) turTru1.60.genome : Tursiops_truncatus turTru1.61.genome : Tursiops_truncatus # Bos taurus : University of Maryland version 3.1 UMD3_1.genome : Bos_taurus # Vaccinia WR (NCBIM37) (ENSEMBL) gi|29692106|gb|AY243312.1| vacwr.genome : Vaccinia_Western_Reserve # Vibrio Cholerae vibrio.genome : Vibrio Cholerae vibrio.chromosomes : NC_002505.1, NC_002506.1 vibrio.NC_002505.1.codonTable : Bacterial_and_Plant_Plastid vibrio.NC_002506.1.codonTable : Bacterial_and_Plant_Plastid # Vicugna pacos genes (vicPac1) (ENSEMBL) vicPac1.60.genome : Vicugna_pacos vicPac1.61.genome : Vicugna_pacos # Xenopus tropicalis genes xtrop4.1.60.genome : Xenopus_tropicalis xtrop4.1.61.genome : Xenopus_tropicalis # Xenopus tropicalis xtrop7.1.genome : Xenopus_tropicalis xtrop7.1.reference : ftp://ftp.xenbase.org/pub/Genomics/JGI/Xentr7.1/ #--- # Ensembl 63 versions #--- ailMel1.63.genome : Ailuropoda_melanoleuca ailMel1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ AnoCar2.0.63.genome : Anolis_carolinensis AnoCar2.0.63.reference : ftp://ftp.ensembl.org/pub/release-63/ Btau_4.0.63.genome : Bos_taurus Btau_4.0.63.reference : ftp://ftp.ensembl.org/pub/release-63/ WS220.63.genome : Caenorhabditis_elegans WS220.63.reference : ftp://ftp.ensembl.org/pub/release-63/ C_jacchus3.2.1.63.genome : Callithrix_jacchus C_jacchus3.2.1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ BROADD2.63.genome : Canis_familiaris BROADD2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ cavPor3.63.genome : Cavia_porcellus cavPor3.63.reference : ftp://ftp.ensembl.org/pub/release-63/ choHof1.63.genome : Choloepus_hoffmanni choHof1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ JGI2.63.genome : Ciona_intestinalis JGI2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ CSAV2.0.63.genome : Ciona_savignyi CSAV2.0.63.reference : ftp://ftp.ensembl.org/pub/release-63/ Zv9.63.genome : Danio_rerio Zv9.63.reference : ftp://ftp.ensembl.org/pub/release-63/ dasNov2.63.genome : Dasypus_novemcinctus dasNov2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ dipOrd1.63.genome : Dipodomys_ordii dipOrd1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ BDGP5.25.63.genome : Drosophila_melanogaster BDGP5.25.63.reference : ftp://ftp.ensembl.org/pub/release-63/ TENREC.63.genome : Echinops_telfairi TENREC.63.reference : ftp://ftp.ensembl.org/pub/release-63/ EquCab2.63.genome : Equus_caballus EquCab2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ HEDGEHOG.63.genome : Erinaceus_europaeus HEDGEHOG.63.reference : ftp://ftp.ensembl.org/pub/release-63/ CAT.63.genome : Felis_catus CAT.63.reference : ftp://ftp.ensembl.org/pub/release-63/ WASHUC2.63.genome : Gallus_gallus WASHUC2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ BROADS1.63.genome : Gasterosteus_aculeatus BROADS1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ gorGor3.63.genome : Gorilla_gorilla gorGor3.63.reference : ftp://ftp.ensembl.org/pub/release-63/ GRCh37.63.genome : Homo_sapiens GRCh37.63.reference : ftp://ftp.ensembl.org/pub/release-63/ loxAfr3.63.genome : Loxodonta_africana loxAfr3.63.reference : ftp://ftp.ensembl.org/pub/release-63/ MMUL_1.63.genome : Macaca_mulatta MMUL_1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ Meug_1.0.63.genome : Macropus_eugenii Meug_1.0.63.reference : ftp://ftp.ensembl.org/pub/release-63/ UMD2.63.genome : Meleagris_gallopavo UMD2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ micMur1.63.genome : Microcebus_murinus micMur1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ BROADO5.63.genome : Monodelphis_domestica BROADO5.63.reference : ftp://ftp.ensembl.org/pub/release-63/ NCBIM37.63.genome : Mus_musculus NCBIM37.63.reference : ftp://ftp.ensembl.org/pub/release-63/ Myoluc2.0.63.genome : Myotis_lucifugus Myoluc2.0.63.reference : ftp://ftp.ensembl.org/pub/release-63/ Nleu1.0.63.genome : Nomascus_leucogenys Nleu1.0.63.reference : ftp://ftp.ensembl.org/pub/release-63/ pika.63.genome : Ochotona_princeps pika.63.reference : ftp://ftp.ensembl.org/pub/release-63/ OANA5.63.genome : Ornithorhynchus_anatinus OANA5.63.reference : ftp://ftp.ensembl.org/pub/release-63/ oryCun2.63.genome : Oryctolagus_cuniculus oryCun2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ MEDAKA1.63.genome : Oryzias_latipes MEDAKA1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ BUSHBABY1.63.genome : Otolemur_garnettii BUSHBABY1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ CHIMP2.1.63.genome : Pan_troglodytes CHIMP2.1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ PPYG2.63.genome : Pongo_abelii PPYG2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ proCap1.63.genome : Procavia_capensis proCap1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ pteVam1.63.genome : Pteropus_vampyrus pteVam1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ RGSC3.4.63.genome : Rattus_norvegicus RGSC3.4.63.reference : ftp://ftp.ensembl.org/pub/release-63/ EF3.63.genome : Saccharomyces_cerevisiae EF3.63.reference : ftp://ftp.ensembl.org/pub/release-63/ COMMON_SHREW1.63.genome : Sorex_araneus COMMON_SHREW1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ SQUIRREL.63.genome : Spermophilus_tridecemlineatus SQUIRREL.63.reference : ftp://ftp.ensembl.org/pub/release-63/ Sscrofa9.63.genome : Sus_scrofa Sscrofa9.63.reference : ftp://ftp.ensembl.org/pub/release-63/ taeGut3.2.4.63.genome : Taeniopygia_guttata taeGut3.2.4.63.reference : ftp://ftp.ensembl.org/pub/release-63/ FUGU4.63.genome : Takifugu_rubripes FUGU4.63.reference : ftp://ftp.ensembl.org/pub/release-63/ tarSyr1.63.genome : Tarsius_syrichta tarSyr1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ TETRAODON8.63.genome : Tetraodon_nigroviridis TETRAODON8.63.reference : ftp://ftp.ensembl.org/pub/release-63/ TREESHREW.63.genome : Tupaia_belangeri TREESHREW.63.reference : ftp://ftp.ensembl.org/pub/release-63/ turTru1.63.genome : Tursiops_truncatus turTru1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ vicPac1.63.genome : Vicugna_pacos vicPac1.63.reference : ftp://ftp.ensembl.org/pub/release-63/ JGI_4.2.63.genome : Xenopus_tropicalis JGI_4.2.63.reference : ftp://ftp.ensembl.org/pub/release-63/ #--- # Ensembl 64 versions #--- ailMel1.64.genome : Ailuropoda_melanoleuca ailMel1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ AnoCar2.0.64.genome : Anolis_carolinensis AnoCar2.0.64.reference : ftp://ftp.ensembl.org/pub/release-64/ UMD3.1.64.genome : Bos_taurus UMD3.1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ WS220.64.genome : Caenorhabditis_elegans WS220.64.reference : ftp://ftp.ensembl.org/pub/release-64/ C_jacchus3.2.1.64.genome : Callithrix_jacchus C_jacchus3.2.1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ BROADD2.64.genome : Canis_familiaris BROADD2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ cavPor3.64.genome : Cavia_porcellus cavPor3.64.reference : ftp://ftp.ensembl.org/pub/release-64/ choHof1.64.genome : Choloepus_hoffmanni choHof1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ JGI2.64.genome : Ciona_intestinalis JGI2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ CSAV2.0.64.genome : Ciona_savignyi CSAV2.0.64.reference : ftp://ftp.ensembl.org/pub/release-64/ Zv9.64.genome : Danio_rerio Zv9.64.reference : ftp://ftp.ensembl.org/pub/release-64/ dasNov2.64.genome : Dasypus_novemcinctus dasNov2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ dipOrd1.64.genome : Dipodomys_ordii dipOrd1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ BDGP5.25.64.genome : Drosophila_melanogaster BDGP5.25.64.reference : ftp://ftp.ensembl.org/pub/release-64/ TENREC.64.genome : Echinops_telfairi TENREC.64.reference : ftp://ftp.ensembl.org/pub/release-64/ EquCab2.64.genome : Equus_caballus EquCab2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ HEDGEHOG.64.genome : Erinaceus_europaeus HEDGEHOG.64.reference : ftp://ftp.ensembl.org/pub/release-64/ CAT.64.genome : Felis_catus CAT.64.reference : ftp://ftp.ensembl.org/pub/release-64/ WASHUC2.64.genome : Gallus_gallus WASHUC2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ BROADS1.64.genome : Gasterosteus_aculeatus BROADS1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ gorGor3.1.64.genome : Gorilla_gorilla gorGor3.1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ GRCh37.64.genome : Homo_sapiens GRCh37.64.reference : ftp://ftp.ensembl.org/pub/release-64/ loxAfr3.64.genome : Loxodonta_africana loxAfr3.64.reference : ftp://ftp.ensembl.org/pub/release-64/ MMUL_1.64.genome : Macaca_mulatta MMUL_1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ Meug_1.0.64.genome : Macropus_eugenii Meug_1.0.64.reference : ftp://ftp.ensembl.org/pub/release-64/ UMD2.64.genome : Meleagris_gallopavo UMD2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ micMur1.64.genome : Microcebus_murinus micMur1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ BROADO5.64.genome : Monodelphis_domestica BROADO5.64.reference : ftp://ftp.ensembl.org/pub/release-64/ NCBIM37.64.genome : Mus_musculus NCBIM37.64.reference : ftp://ftp.ensembl.org/pub/release-64/ Myoluc2.0.64.genome : Myotis_lucifugus Myoluc2.0.64.reference : ftp://ftp.ensembl.org/pub/release-64/ Nleu1.0.64.genome : Nomascus_leucogenys Nleu1.0.64.reference : ftp://ftp.ensembl.org/pub/release-64/ pika.64.genome : Ochotona_princeps pika.64.reference : ftp://ftp.ensembl.org/pub/release-64/ OANA5.64.genome : Ornithorhynchus_anatinus OANA5.64.reference : ftp://ftp.ensembl.org/pub/release-64/ oryCun2.64.genome : Oryctolagus_cuniculus oryCun2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ MEDAKA1.64.genome : Oryzias_latipes MEDAKA1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ BUSHBABY1.64.genome : Otolemur_garnettii BUSHBABY1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ CHIMP2.1.64.genome : Pan_troglodytes CHIMP2.1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ Petromyzon_marinus_7.0.64.genome : Petromyzon_marinus Petromyzon_marinus_7.0.64.reference : ftp://ftp.ensembl.org/pub/release-64/ PPYG2.64.genome : Pongo_abelii PPYG2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ proCap1.64.genome : Procavia_capensis proCap1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ pteVam1.64.genome : Pteropus_vampyrus pteVam1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ RGSC3.4.64.genome : Rattus_norvegicus RGSC3.4.64.reference : ftp://ftp.ensembl.org/pub/release-64/ EF3.64.genome : Saccharomyces_cerevisiae EF3.64.reference : ftp://ftp.ensembl.org/pub/release-64/ DEVIL7.0.64.genome : Sarcophilus_harrisii DEVIL7.0.64.reference : ftp://ftp.ensembl.org/pub/release-64/ COMMON_SHREW1.64.genome : Sorex_araneus COMMON_SHREW1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ SQUIRREL.64.genome : Spermophilus_tridecemlineatus SQUIRREL.64.reference : ftp://ftp.ensembl.org/pub/release-64/ Sscrofa9.64.genome : Sus_scrofa Sscrofa9.64.reference : ftp://ftp.ensembl.org/pub/release-64/ taeGut3.2.4.64.genome : Taeniopygia_guttata taeGut3.2.4.64.reference : ftp://ftp.ensembl.org/pub/release-64/ FUGU4.64.genome : Takifugu_rubripes FUGU4.64.reference : ftp://ftp.ensembl.org/pub/release-64/ tarSyr1.64.genome : Tarsius_syrichta tarSyr1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ TETRAODON8.64.genome : Tetraodon_nigroviridis TETRAODON8.64.reference : ftp://ftp.ensembl.org/pub/release-64/ TREESHREW.64.genome : Tupaia_belangeri TREESHREW.64.reference : ftp://ftp.ensembl.org/pub/release-64/ turTru1.64.genome : Tursiops_truncatus turTru1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ vicPac1.64.genome : Vicugna_pacos vicPac1.64.reference : ftp://ftp.ensembl.org/pub/release-64/ JGI_4.2.64.genome : Xenopus_tropicalis JGI_4.2.64.reference : ftp://ftp.ensembl.org/pub/release-64/ #--- # Ensembl 65 versions #--- ailMel1.65.genome : Ailuropoda_melanoleuca ailMel1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ AnoCar2.0.65.genome : Anolis_carolinensis AnoCar2.0.65.reference : ftp://ftp.ensembl.org/pub/release-65/ UMD3.1.65.genome : Bos_taurus UMD3.1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ WS220.65.genome : Caenorhabditis_elegans WS220.65.reference : ftp://ftp.ensembl.org/pub/release-65/ C_jacchus3.2.1.65.genome : Callithrix_jacchus C_jacchus3.2.1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ BROADD2.65.genome : Canis_familiaris BROADD2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ cavPor3.65.genome : Cavia_porcellus cavPor3.65.reference : ftp://ftp.ensembl.org/pub/release-65/ choHof1.65.genome : Choloepus_hoffmanni choHof1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ JGI2.65.genome : Ciona_intestinalis JGI2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ CSAV2.0.65.genome : Ciona_savignyi CSAV2.0.65.reference : ftp://ftp.ensembl.org/pub/release-65/ Zv9.65.genome : Danio_rerio Zv9.65.reference : ftp://ftp.ensembl.org/pub/release-65/ dasNov2.65.genome : Dasypus_novemcinctus dasNov2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ dipOrd1.65.genome : Dipodomys_ordii dipOrd1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ BDGP5.25.65.genome : Drosophila_melanogaster BDGP5.25.65.reference : ftp://ftp.ensembl.org/pub/release-65/ TENREC.65.genome : Echinops_telfairi TENREC.65.reference : ftp://ftp.ensembl.org/pub/release-65/ EquCab2.65.genome : Equus_caballus EquCab2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ HEDGEHOG.65.genome : Erinaceus_europaeus HEDGEHOG.65.reference : ftp://ftp.ensembl.org/pub/release-65/ CAT.65.genome : Felis_catus CAT.65.reference : ftp://ftp.ensembl.org/pub/release-65/ WASHUC2.65.genome : Gallus_gallus WASHUC2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ BROADS1.65.genome : Gasterosteus_aculeatus BROADS1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ gorGor3.1.65.genome : Gorilla_gorilla gorGor3.1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ GRCh37.65.genome : Homo_sapiens GRCh37.65.reference : ftp://ftp.ensembl.org/pub/release-65/ loxAfr3.65.genome : Loxodonta_africana loxAfr3.65.reference : ftp://ftp.ensembl.org/pub/release-65/ MMUL_1.65.genome : Macaca_mulatta MMUL_1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ Meug_1.0.65.genome : Macropus_eugenii Meug_1.0.65.reference : ftp://ftp.ensembl.org/pub/release-65/ UMD2.65.genome : Meleagris_gallopavo UMD2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ micMur1.65.genome : Microcebus_murinus micMur1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ BROADO5.65.genome : Monodelphis_domestica BROADO5.65.reference : ftp://ftp.ensembl.org/pub/release-65/ NCBIM37.65.genome : Mus_musculus NCBIM37.65.reference : ftp://ftp.ensembl.org/pub/release-65/ Myoluc2.0.65.genome : Myotis_lucifugus Myoluc2.0.65.reference : ftp://ftp.ensembl.org/pub/release-65/ Nleu1.0.65.genome : Nomascus_leucogenys Nleu1.0.65.reference : ftp://ftp.ensembl.org/pub/release-65/ pika.65.genome : Ochotona_princeps pika.65.reference : ftp://ftp.ensembl.org/pub/release-65/ OANA5.65.genome : Ornithorhynchus_anatinus OANA5.65.reference : ftp://ftp.ensembl.org/pub/release-65/ oryCun2.65.genome : Oryctolagus_cuniculus oryCun2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ MEDAKA1.65.genome : Oryzias_latipes MEDAKA1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ BUSHBABY1.65.genome : Otolemur_garnettii BUSHBABY1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ CHIMP2.1.65.genome : Pan_troglodytes CHIMP2.1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ Petromyzon_marinus_7.0.65.genome : Petromyzon_marinus Petromyzon_marinus_7.0.65.reference : ftp://ftp.ensembl.org/pub/release-65/ PPYG2.65.genome : Pongo_abelii PPYG2.65.reference : ftp://ftp.ensembl.org/pub/release-65/ proCap1.65.genome : Procavia_capensis proCap1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ pteVam1.65.genome : Pteropus_vampyrus pteVam1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ RGSC3.4.65.genome : Rattus_norvegicus RGSC3.4.65.reference : ftp://ftp.ensembl.org/pub/release-65/ EF4.65.genome : Saccharomyces_cerevisiae EF4.65.reference : ftp://ftp.ensembl.org/pub/release-65/ DEVIL7.0.65.genome : Sarcophilus_harrisii DEVIL7.0.65.reference : ftp://ftp.ensembl.org/pub/release-65/ COMMON_SHREW1.65.genome : Sorex_araneus COMMON_SHREW1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ SQUIRREL.65.genome : Spermophilus_tridecemlineatus SQUIRREL.65.reference : ftp://ftp.ensembl.org/pub/release-65/ Sscrofa9.65.genome : Sus_scrofa Sscrofa9.65.reference : ftp://ftp.ensembl.org/pub/release-65/ taeGut3.2.4.65.genome : Taeniopygia_guttata taeGut3.2.4.65.reference : ftp://ftp.ensembl.org/pub/release-65/ FUGU4.65.genome : Takifugu_rubripes FUGU4.65.reference : ftp://ftp.ensembl.org/pub/release-65/ tarSyr1.65.genome : Tarsius_syrichta tarSyr1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ TETRAODON8.65.genome : Tetraodon_nigroviridis TETRAODON8.65.reference : ftp://ftp.ensembl.org/pub/release-65/ TREESHREW.65.genome : Tupaia_belangeri TREESHREW.65.reference : ftp://ftp.ensembl.org/pub/release-65/ turTru1.65.genome : Tursiops_truncatus turTru1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ vicPac1.65.genome : Vicugna_pacos vicPac1.65.reference : ftp://ftp.ensembl.org/pub/release-65/ #--- # Ensembl 66 versions #--- ailMel1.66.genome : Ailuropoda_melanoleuca ailMel1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ AnoCar2.0.66.genome : Anolis_carolinensis AnoCar2.0.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ UMD3.1.66.genome : Bos_taurus UMD3.1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ WS220.66.genome : Caenorhabditis_elegans WS220.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ C_jacchus3.2.1.66.genome : Callithrix_jacchus C_jacchus3.2.1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ BROADD2.66.genome : Canis_familiaris BROADD2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ cavPor3.66.genome : Cavia_porcellus cavPor3.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ choHof1.66.genome : Choloepus_hoffmanni choHof1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ KH.66.genome : Ciona_intestinalis KH.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ CSAV2.0.66.genome : Ciona_savignyi CSAV2.0.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ Zv9.66.genome : Danio_rerio Zv9.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ dasNov2.66.genome : Dasypus_novemcinctus dasNov2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ dipOrd1.66.genome : Dipodomys_ordii dipOrd1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ BDGP5.66.genome : Drosophila_melanogaster BDGP5.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ TENREC.66.genome : Echinops_telfairi TENREC.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ EquCab2.66.genome : Equus_caballus EquCab2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ HEDGEHOG.66.genome : Erinaceus_europaeus HEDGEHOG.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ CAT.66.genome : Felis_catus CAT.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ gadMor1.66.genome : Gadus_morhua gadMor1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ WASHUC2.66.genome : Gallus_gallus WASHUC2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ BROADS1.66.genome : Gasterosteus_aculeatus BROADS1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ gorGor3.1.66.genome : Gorilla_gorilla gorGor3.1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ GRCh37.66.genome : Homo_sapiens GRCh37.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ LatCha1.66.genome : Latimeria_chalumnae LatCha1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ loxAfr3.66.genome : Loxodonta_africana loxAfr3.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ MMUL_1.66.genome : Macaca_mulatta MMUL_1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ Meug_1.0.66.genome : Macropus_eugenii Meug_1.0.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ UMD2.66.genome : Meleagris_gallopavo UMD2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ micMur1.66.genome : Microcebus_murinus micMur1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ BROADO5.66.genome : Monodelphis_domestica BROADO5.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ NCBIM37.66.genome : Mus_musculus NCBIM37.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ Myoluc2.0.66.genome : Myotis_lucifugus Myoluc2.0.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ Nleu1.0.66.genome : Nomascus_leucogenys Nleu1.0.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ pika.66.genome : Ochotona_princeps pika.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ OANA5.66.genome : Ornithorhynchus_anatinus OANA5.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ oryCun2.66.genome : Oryctolagus_cuniculus oryCun2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ MEDAKA1.66.genome : Oryzias_latipes MEDAKA1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ OtoGar3.66.genome : Otolemur_garnettii OtoGar3.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ CHIMP2.1.4.66.genome : Pan_troglodytes CHIMP2.1.4.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ Pmarinus_7.0.66.genome : Petromyzon_marinus Pmarinus_7.0.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ PPYG2.66.genome : Pongo_abelii PPYG2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ proCap1.66.genome : Procavia_capensis proCap1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ pteVam1.66.genome : Pteropus_vampyrus pteVam1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ RGSC3.4.66.genome : Rattus_norvegicus RGSC3.4.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ EF4.66.genome : Saccharomyces_cerevisiae EF4.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ DEVIL7.0.66.genome : Sarcophilus_harrisii DEVIL7.0.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ COMMON_SHREW1.66.genome : Sorex_araneus COMMON_SHREW1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ SQUIRREL.66.genome : Spermophilus_tridecemlineatus SQUIRREL.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ Sscrofa9.66.genome : Sus_scrofa Sscrofa9.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ taeGut3.2.4.66.genome : Taeniopygia_guttata taeGut3.2.4.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ FUGU4.66.genome : Takifugu_rubripes FUGU4.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ tarSyr1.66.genome : Tarsius_syrichta tarSyr1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ TETRAODON8.66.genome : Tetraodon_nigroviridis TETRAODON8.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ TREESHREW.66.genome : Tupaia_belangeri TREESHREW.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ turTru1.66.genome : Tursiops_truncatus turTru1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ vicPac1.66.genome : Vicugna_pacos vicPac1.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ JGI_4.2.66.genome : Xenopus_tropicalis JGI_4.2.66.reference : ftp://ftp.ensembl.org/pub/release-66/gtf/ #------------------------------------------------------------------------------- # Codon tables # # Format: It's a comma separated "codon/aminoAcid[+*]" list # Where 'codon' is in uppper case, aminoAcid is a one letter coce, '+' denotes start codon and '*' denotes stop codon # # References: http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi # ftp://ftp.ncbi.nih.gov/entrez/misc/data/gc.prt #------------------------------------------------------------------------------- codon.Standard: TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Vertebrate_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/*, AGG/*, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Yeast_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/T, CTC/T, CTA/T, CTG/T, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Mold_Mitochondrial: TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Protozoan_Mitochondrial: TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Coelenterate: TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Mitochondrial: TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Mycoplasma: TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Spiroplasma: TTT/F, TTC/F, TTA/L+, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Invertebrate_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Ciliate_Nuclear: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Q, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Dasycladacean_Nuclear: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Q, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Hexamita_Nuclear: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Q, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Echinoderm_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Flatworm_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Euplotid_Nuclear: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/C, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Bacterial_and_Plant_Plastid: TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I+, ATA/I+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Alternative_Yeast_Nuclear: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/S+, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Ascidian_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L+, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/M+, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/G, AGG/G, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Alternative_Flatworm_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/Y, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Blepharisma_Macronuclear: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/Q, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Chlorophycean_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/L, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Trematode_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/W, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/M, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/N, AAG/K, AGT/S, AGC/S, AGA/S, AGG/S, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Scenedesmus_obliquus_Mitochondrial: TTT/F, TTC/F, TTA/L, TTG/L, TCT/S, TCC/S, TCA/*, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/L, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G codon.Thraustochytrium_Mitochondrial: TTT/F, TTC/F, TTA/*, TTG/L, TCT/S, TCC/S, TCA/S, TCG/S, TAT/Y, TAC/Y, TAA/*, TAG/*, TGT/C, TGC/C, TGA/*, TGG/W, CTT/L, CTC/L, CTA/L, CTG/L, CCT/P, CCC/P, CCA/P, CCG/P, CAT/H, CAC/H, CAA/Q, CAG/Q, CGT/R, CGC/R, CGA/R, CGG/R, ATT/I+, ATC/I, ATA/I, ATG/M+, ACT/T, ACC/T, ACA/T, ACG/T, AAT/N, AAC/N, AAA/K, AAG/K, AGT/S, AGC/S, AGA/R, AGG/R, GTT/V, GTC/V, GTA/V, GTG/V+, GCT/A, GCC/A, GCA/A, GCG/A, GAT/D, GAC/D, GAA/E, GAG/E, GGT/G, GGC/G, GGA/G, GGG/G