Mercurial > repos > pcingola > snpeff
directory /snpEff_2_1a/snpEff_2_1a/scripts/ @ 3:c052639fa666 default tip
| name | size | permissions |
|---|---|---|
| [up] | drwxr-xr-x | |
 data/
|
drwxr-xr-x | |
 ._bam2fastq.pl
|
170 | -rwxr-xr-x |
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._buildTestCases.sh
|
170 | -rwxr-xr-x |
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._build_regulation.sh
|
170 | -rwxr-xr-x |
|
._compareToEnsembl.sh
|
170 | -rwxr-xr-x |
|
._distro.sh
|
170 | -rwxr-xr-x |
|
._download.sh
|
170 | -rwxr-xr-x |
|
._fasta2tab.pl
|
170 | -rwxr-xr-x |
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._fastaSample.pl
|
170 | -rwxr-xr-x |
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._fastaSplit.pl
|
170 | -rwxr-xr-x |
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._file2GenomeName.pl
|
170 | -rwxr-xr-x |
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._filterOutBoringPredictions.sh
|
170 | -rwxr-xr-x |
|
._filterOutBoringPredictionsVcf.sh
|
170 | -rwxr-xr-x |
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._genesTxtColumnNames.sh
|
170 | -rw-r--r-- |
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._hist.pl
|
170 | -rwxr-xr-x |
|
._joinSnpEff.pl
|
170 | -rwxr-xr-x |
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._nOutOfM.pl
|
170 | -rw-r--r-- |
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._promoterSequences.sh
|
170 | -rwxr-xr-x |
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._proteinFasta2NM.pl
|
170 | -rwxr-xr-x |
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._qqplot.pl
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170 | -rwxr-xr-x |
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._queue.pl
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170 | -rwxr-xr-x |
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._queue_build.sh
|
170 | -rwxr-xr-x |
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._queue_build.txt
|
170 | -rw-r--r-- |
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._queue_build_regulation.txt
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170 | -rw-r--r-- |
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._queue_dump.txt
|
170 | -rw-r--r-- |
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._queue_test.sh
|
170 | -rwxr-xr-x |
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._queue_test.txt
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170 | -rw-r--r-- |
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._randBedIntervals.pl
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170 | -rwxr-xr-x |
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._sift2vcf.pl
|
170 | -rwxr-xr-x |
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._sift2vcf.sh
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170 | -rwxr-xr-x |
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._smoothScatter.pl
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170 | -rwxr-xr-x |
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._snpEff.sh
|
170 | -rwxr-xr-x |
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._snpEffM.sh
|
170 | -rwxr-xr-x |
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._snpEffXL.sh
|
170 | -rwxr-xr-x |
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._snpSift.sh
|
170 | -rwxr-xr-x |
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._test.Broad_NS_SYN.sh
|
170 | -rwxr-xr-x |
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._uniqCount.pl
|
170 | -rw-r--r-- |
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._vcfEffOnePerLine.pl
|
170 | -rwxr-xr-x |
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._vcfSpeedTest.sh
|
170 | -rwxr-xr-x |
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bam2fastq.pl
|
115 | -rwxr-xr-x |
|
buildTestCases.sh
|
458 | -rwxr-xr-x |
|
build_regulation.sh
|
68 | -rwxr-xr-x |
|
compareToEnsembl.sh
|
238 | -rwxr-xr-x |
|
distro.sh
|
1173 | -rwxr-xr-x |
|
download.sh
|
2740 | -rwxr-xr-x |
|
fasta2tab.pl
|
773 | -rwxr-xr-x |
|
fastaSample.pl
|
797 | -rwxr-xr-x |
|
fastaSplit.pl
|
1100 | -rwxr-xr-x |
|
file2GenomeName.pl
|
621 | -rwxr-xr-x |
|
filterOutBoringPredictions.sh
|
252 | -rwxr-xr-x |
|
filterOutBoringPredictionsVcf.sh
|
259 | -rwxr-xr-x |
|
genesTxtColumnNames.sh
|
1024 | -rw-r--r-- |
|
hist.pl
|
2252 | -rwxr-xr-x |
|
joinSnpEff.pl
|
3482 | -rwxr-xr-x |
|
nOutOfM.pl
|
285 | -rw-r--r-- |
|
promoterSequences.sh
|
229 | -rwxr-xr-x |
|
proteinFasta2NM.pl
|
1149 | -rwxr-xr-x |
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qqplot.pl
|
1978 | -rwxr-xr-x |
|
queue.pl
|
4084 | -rwxr-xr-x |
|
queue_build.sh
|
65 | -rwxr-xr-x |
|
queue_build.txt
|
18418 | -rw-r--r-- |
|
queue_build_regulation.txt
|
5817 | -rw-r--r-- |
|
queue_dump.txt
|
7421 | -rw-r--r-- |
|
queue_test.sh
|
64 | -rwxr-xr-x |
|
queue_test.txt
|
15255 | -rw-r--r-- |
|
randBedIntervals.pl
|
775 | -rwxr-xr-x |
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sift2vcf.pl
|
770 | -rwxr-xr-x |
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sift2vcf.sh
|
1430 | -rwxr-xr-x |
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smoothScatter.pl
|
2141 | -rwxr-xr-x |
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snpEff.sh
|
291 | -rwxr-xr-x |
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snpEffM.sh
|
290 | -rwxr-xr-x |
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snpEffXL.sh
|
292 | -rwxr-xr-x |
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snpSift.sh
|
590 | -rwxr-xr-x |
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test.Broad_NS_SYN.sh
|
887 | -rwxr-xr-x |
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uniqCount.pl
|
198 | -rw-r--r-- |
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vcfEffOnePerLine.pl
|
1450 | -rwxr-xr-x |
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vcfSpeedTest.sh
|
116 | -rwxr-xr-x |