Mercurial > repos > pedro_araujo > phage_host_prediction
comparison README.rst @ 2:8674f554d76b draft
Uploaded
author | pedro_araujo |
---|---|
date | Fri, 29 Jan 2021 16:01:12 +0000 |
parents | e4b3fc88efe0 |
children | b5ef05b57eaa |
comparison
equal
deleted
inserted
replaced
1:f8dee15a72a4 | 2:8674f554d76b |
---|---|
1 | 1 |
2 PhageHostPrediction | 2 PhageHostPrediction |
3 =============== | |
4 | 3 |
5 Predict interactions between phages and bacterial strains. | 4 Predict interactions between phages and bacterial strains. |
6 | 5 |
7 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species. | 6 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species. |
8 | 7 |