Mercurial > repos > pedro_araujo > phage_host_prediction

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author pedro_araujo
date Fri, 29 Jan 2021 16:03:15 +0000
parents 8674f554d76b
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4 Predict interactions between phages and bacterial strains. 5 Predict interactions between phages and bacterial strains.
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6 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species. 7 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species.
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