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comparison macros.xml @ 2:224e0cf4aaeb draft

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planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
author goeckslab
date Thu, 01 Sep 2022 22:43:42 +0000
parents 57f1260ca94e
children ee92746d141a
comparison
equal deleted inserted replaced
1:57f1260ca94e 2:224e0cf4aaeb
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <container type="docker">labsyspharm/unetcoreograph:@VERSION@</container> 5 <!--
6 <requirement type="package" version="3.6">python</requirement> 6 <requirement type="package" version="3.6">python</requirement>
7 <requirement type="package" version="1.15.1">tensorflow-estimator</requirement> 7 <requirement type="package" version="1.15.1">tensorflow-estimator</requirement>
8 <requirement type="package" version="1.15">tensorflow</requirement> 8 <requirement type="package" version="1.15">tensorflow</requirement>
9 <requirement type="package">cython</requirement> 9 <requirement type="package">cython</requirement>
10 <requirement type="package" version="0.14.2">scikit-image</requirement> 10 <requirement type="package" version="0.14.2">scikit-image</requirement>
11 <requirement type="package">matplotlib</requirement> 11 <requirement type="package">matplotlib</requirement>
12 <requirement type="package" version="2020.2.16">tifffile</requirement> 12 <requirement type="package" version="2020.2.16">tifffile</requirement>
13 <requirement type="package" version="1.1.0">scipy</requirement> 13 <requirement type="package" version="1.1.0">scipy</requirement>
14 <requirement type="package">opencv</requirement> 14 <requirement type="package">opencv</requirement>
15 <requirement type="package" version="0.8.1">pytiff</requirement> 15 <requirement type="package" version="0.8.1">pytiff</requirement>
16 -->
17 <container type="docker">labsyspharm/unetcoreograph:@TOOL_VERSION@</container>
16 </requirements> 18 </requirements>
17 </xml> 19 </xml>
18 20
19 <xml name="version_cmd"> 21 <xml name="version_cmd">
20 <version_command>echo @VERSION@</version_command> 22 <version_command>echo @TOOL_VERSION@</version_command>
21 </xml> 23 </xml>
22 <xml name="citations"> 24 <xml name="citations">
23 <citations> 25 <citations>
24 </citations> 26 </citations>
25 </xml> 27 </xml>
26 28
27 <token name="@VERSION@">2.2.8</token> 29 <token name="@TOOL_VERSION@">2.2.8</token>
30 <token name="@VERSION_SUFFIX@">0</token>
28 <token name="@CMD_BEGIN@"><![CDATA[ 31 <token name="@CMD_BEGIN@"><![CDATA[
29 UNET_PATH=""; 32 UNET_PATH="" &&
30 if [ -f "/app/UNetCoreograph.py" ]; then 33 if [ -f "/app/UNetCoreograph.py" ]; then
31 export UNET_PATH="/app/UNetCoreograph.py"; 34 export UNET_PATH="/app/UNetCoreograph.py";
32 else 35 else
33 export UNET_PATH="${__tool_directory__}/UNetCoreograph.py"; 36 export UNET_PATH="${__tool_directory__}/UNetCoreograph.py";
34 fi; 37 fi &&
35 ]]></token> 38 ]]></token>
36 </macros> 39 </macros>