Mercurial > repos > perssond > coreograph

diff macros.xml @ 2:224e0cf4aaeb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
author goeckslab
date Thu, 01 Sep 2022 22:43:42 +0000
parents 57f1260ca94e
children ee92746d141a
line wrap: on
line diff
--- a/macros.xml	Fri Mar 11 23:40:51 2022 +0000
+++ b/macros.xml	Thu Sep 01 22:43:42 2022 +0000
@@ -2,7 +2,7 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <container type="docker">labsyspharm/unetcoreograph:@VERSION@</container>
+            <!--
             <requirement type="package" version="3.6">python</requirement>
             <requirement type="package" version="1.15.1">tensorflow-estimator</requirement>
             <requirement type="package" version="1.15">tensorflow</requirement>
@@ -13,24 +13,27 @@
             <requirement type="package" version="1.1.0">scipy</requirement>
             <requirement type="package">opencv</requirement>
             <requirement type="package" version="0.8.1">pytiff</requirement>
+            -->
+            <container type="docker">labsyspharm/unetcoreograph:@TOOL_VERSION@</container>
         </requirements>
     </xml>
 
     <xml name="version_cmd">
-        <version_command>echo @VERSION@</version_command>
+        <version_command>echo @TOOL_VERSION@</version_command>
     </xml>
     <xml name="citations">
         <citations>
         </citations>
     </xml>
 
-    <token name="@VERSION@">2.2.8</token>
+    <token name="@TOOL_VERSION@">2.2.8</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@CMD_BEGIN@"><![CDATA[
-    UNET_PATH="";
+    UNET_PATH="" &&
     if [ -f "/app/UNetCoreograph.py" ]; then
         export UNET_PATH="/app/UNetCoreograph.py";
     else
         export UNET_PATH="${__tool_directory__}/UNetCoreograph.py";
-    fi;
+    fi &&
     ]]></token>
 </macros>