Mercurial > repos > perssond > coreograph

diff macros.xml @ 0:99308601eaa6 draft

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"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
author perssond
date Wed, 19 May 2021 21:34:38 +0000
parents
children 57f1260ca94e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed May 19 21:34:38 2021 +0000
@@ -0,0 +1,29 @@
+<?xml version="1.0"?>
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <container type="docker">labsyspharm/unetcoreograph:@VERSION@</container>
+            <requirement type="package" version="3.6">python</requirement>
+            <requirement type="package" version="1.15.1">tensorflow-estimator</requirement>
+            <requirement type="package" version="1.15">tensorflow</requirement>
+            <requirement type="package">cython</requirement>
+            <requirement type="package" version="0.14.2">scikit-image</requirement>
+            <requirement type="package">matplotlib</requirement>
+            <requirement type="package" version="2020.2.16">tifffile</requirement>
+            <requirement type="package" version="1.1.0">scipy</requirement>
+            <requirement type="package">opencv</requirement>
+            <requirement type="package" version="0.8.1">pytiff</requirement>
+        </requirements>
+    </xml>
+
+    <xml name="version_cmd">
+        <version_command>echo @VERSION@</version_command>
+    </xml>
+    <xml name="citations">
+        <citations>
+        </citations>
+    </xml>
+
+    <token name="@VERSION@">2.2.0</token>
+    <token name="@CMD_BEGIN@">python ${__tool_directory__}/UNetCoreograph.py</token>
+</macros>