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comparison quantification.xml @ 5:3a916c4e9f5f draft

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planemo upload for repository https://github.com/goeckslab/tools-mti commit 0762a583dd9d7333f9b039bc06003caaff0f2103
author goeckslab
date Wed, 28 Dec 2022 21:19:44 +0000
parents 261464223fa3
children e11d5fafd0cc
comparison
equal deleted inserted replaced
4:261464223fa3 5:3a916c4e9f5f
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="version_cmd"/> 7 <expand macro="version_cmd"/>
8 8
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 ln -s '$image' 'input.ome.tiff' && 10 ln -s '$image' 'input.ome.tiff' &&
11 ln -s '$primary_mask' 'primary_mask.tiff' && 11 ln -s '$primary_mask' 'primary_mask.tiff' &&
12 #if $supp_mask 12 #if $supp_mask
13 ln -s '$supp_mask' 'supp_mask.tiff' && 13 ln -s '$supp_mask' 'supp_mask.tiff' &&
14 #end if 14 #end if
62 <param name="primary_mask" value="mask.tiff" /> 62 <param name="primary_mask" value="mask.tiff" />
63 <param name="supp_mask" value="supp_mask.tiff" /> 63 <param name="supp_mask" value="supp_mask.tiff" />
64 <param name="channel_names" value="channels.csv" /> 64 <param name="channel_names" value="channels.csv" />
65 <output name="cellmask" ftype="csv"> 65 <output name="cellmask" ftype="csv">
66 <assert_contents> 66 <assert_contents>
67 <has_n_columns n="11" sep="," delta="1" /> 67 <has_n_lines n="264" delta="1" />
68 </assert_contents> 68 </assert_contents>
69 </output> 69 </output>
70 <output name="suppmask" ftype="csv"> 70 <output name="suppmask" ftype="csv">
71 <assert_contents> 71 <assert_contents>
72 <has_n_columns n="11" sep="," delta="1" /> 72 <has_n_lines n="264" delta="1" />
73 </assert_contents> 73 </assert_contents>
74 </output> 74 </output>
75 </test> 75 </test>
76 </tests> 76 </tests>
77 <help><![CDATA[ 77 <help><![CDATA[