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changeset 6:e11d5fafd0cc draft default tip

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/quantification commit 4a521310a7989b781380c20e1aab3ac13ca86dff
author goeckslab
date Tue, 02 Jul 2024 17:48:30 +0000
parents 3a916c4e9f5f
children
files macros.xml quantification.xml
diffstat 2 files changed, 7 insertions(+), 14 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Dec 28 21:19:44 2022 +0000
+++ b/macros.xml	Tue Jul 02 17:48:30 2024 +0000
@@ -3,8 +3,8 @@
     <xml name="requirements">
         <requirements>
             <!--
-            <requirement type="package" version="3.9">python</requirement>
-            <requirement type="package" version="0.18.0">scikit-image</requirement>
+            <requirement type="package" version="3.11">python</requirement>
+            <requirement type="package" version="0.23.2">scikit-image</requirement>
             <requirement type="package">h5py</requirement>
             <requirement type="package">pandas</requirement>
             <requirement type="package">numpy</requirement>
@@ -19,18 +19,11 @@
     </xml>
     <xml name="citations">
         <citations>
+            <citation type="doi">10.1038/s41592-021-01308-y</citation>
         </citations>
     </xml>
 
-    <token name="@TOOL_VERSION@">1.5.3</token>
-    <token name="@VERSION_SUFFIX@">1</token>
-    <token name="@CMD_BEGIN@"><![CDATA[
-    QUANT_PATH='' &&
-    if [ -f '/app/CommandSingleCellExtraction.py' ]; then
-        export QUANT_PATH='python /app/CommandSingleCellExtraction.py';
-    else
-        export QUANT_PATH='CommandSingleCellExtraction.py';
-    fi &&
-    \$QUANT_PATH
-    ]]></token>
+    <token name="@TOOL_VERSION@">1.6.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@CMD_BEGIN@">mcquant</token>
 </macros>
--- a/quantification.xml	Wed Dec 28 21:19:44 2022 +0000
+++ b/quantification.xml	Tue Jul 02 17:48:30 2024 +0000
@@ -57,7 +57,7 @@
         </data>
      </outputs>
      <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="image" value="test.tiff" />
             <param name="primary_mask" value="mask.tiff" />
             <param name="supp_mask" value="supp_mask.tiff" />