Mercurial > repos > perssond > s3segmenter

comparison macros.xml @ 2:96d0d969ebc9 draft default tip

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planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/s3segmenter commit 0f4f17235c5961c2fd3d4c30180507f66214c11d
author goeckslab
date Fri, 16 Sep 2022 20:05:54 +0000
parents 41e8efe8df43
children
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1:41e8efe8df43 2:96d0d969ebc9
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <container type="docker">labsyspharm/s3segmenter:@VERSION@</container> 5 <!--
6 <requirement type="package" version="3.7">python</requirement> 6 <requirement type="package" version="3.7">python</requirement>
7 <requirement type="package">scikit-learn</requirement> 7 <requirement type="package">scikit-learn</requirement>
8 <requirement version="0.14.2" type="package">scikit-image</requirement> 8 <requirement version="0.14.2" type="package">scikit-image</requirement>
9 <requirement type="package">matplotlib</requirement> 9 <requirement type="package">matplotlib</requirement>
10 <requirement version="2021.6.6" type="package">tifffile</requirement> 10 <requirement version="2021.6.6" type="package">tifffile</requirement>
11 <requirement type="package">opencv</requirement> 11 <requirement type="package">opencv</requirement>
12 <!-- <requirement type="package">ome_types</requirement> --> 12 -->
13 <container type="docker">labsyspharm/s3segmenter:@TOOL_VERSION@</container>
13 </requirements> 14 </requirements>
14 </xml> 15 </xml>
15 16
16 <xml name="version_cmd">
17 <version_command>echo @VERSION@</version_command>
18 </xml>
19 <xml name="citations"> 17 <xml name="citations">
20 <citations> 18 <citations>
21 </citations> 19 </citations>
22 </xml> 20 </xml>
23 21
24 <token name="@VERSION@">1.3.12</token> 22 <token name="@TOOL_VERSION@">1.3.12</token>
25 <token name="@CMD_BEGIN@">python3 $__tool_directory__/S3segmenter.py</token> 23 <token name="@VERSION_SUFFIX@">0</token>
24 <token name="@PROFILE@">19.01</token>
25 <token name="@CMD_BEGIN@"><![CDATA[
26 S3SEG_CMD="" &&
27 if [ -f "/app/S3segmenter.py" ]; then
28 export S3SEG_CMD="python /app/S3segmenter.py";
29 export PYTHONPATH="/app";
30 else
31 export S3SEG_CMD="S3segmenter.py";
32 fi &&
33 ]]></token>
34 <xml name="version_cmd">
35 <version_command>@CMD_BEGIN@ $S3SEG_CMD --help</version_command>
36 </xml>
26 </macros> 37 </macros>