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comparison macros.xml @ 1:74fe58ff55a5 draft default tip

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planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
author goeckslab
date Wed, 07 Sep 2022 23:10:14 +0000
parents 6bec4fef6b2e
children
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0:6bec4fef6b2e 1:74fe58ff55a5
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <container type="docker">labsyspharm/unmicst:@TOOL_VERSION@</container>
6 <!--
5 <requirement type="package" version="3.7">python</requirement> 7 <requirement type="package" version="3.7">python</requirement>
6 <requirement type="package" version="1.15.0">tensorflow</requirement> 8 <requirement type="package" version="1.15.0">tensorflow</requirement>
7 <requirement type="package" version="1.15.1">tensorflow-estimator</requirement> 9 <requirement type="package" version="1.15.1">tensorflow-estimator</requirement>
8 <requirement type="package">cudnn</requirement> 10 <requirement type="package">cudnn</requirement>
9 <requirement type="package" version="10.0">cudatoolkit</requirement> 11 <requirement type="package" version="10.0">cudatoolkit</requirement>
10 <requirement type="package" version="0.17.2">scikit-image</requirement> 12 <requirement type="package" version="0.17.2">scikit-image</requirement>
11 <requirement type="package" version="1.4.1">scipy</requirement> 13 <requirement type="package" version="1.4.1">scipy</requirement>
12 <requirement type="package" version="2020.7.24">tifffile</requirement> 14 <requirement type="package" version="2020.7.24">tifffile</requirement>
13 <requirement type="package" version="2019.7.2">czifile</requirement> 15 <requirement type="package" version="2019.7.2">czifile</requirement>
14 <requirement type="package" version="3.2.3">nd2reader</requirement> 16 <requirement type="package" version="3.2.3">nd2reader</requirement>
17 -->
15 </requirements> 18 </requirements>
16 </xml> 19 </xml>
17 20
18 <xml name="version_cmd"> 21 <xml name="version_cmd">
19 <version_command>echo @VERSION@</version_command> 22 <version_command>@CMD_BEGIN@ --help</version_command>
20 </xml> 23 </xml>
21 <xml name="citations"> 24 <xml name="citations">
22 <citations> 25 <citations>
26 <citation type="doi">10.1101/2021.04.02.438285</citation>
23 </citations> 27 </citations>
24 </xml> 28 </xml>
25 29
26 <token name="@VERSION@">3.1.1</token> 30 <token name="@TOOL_VERSION@">2.7.1</token>
27 <token name="@CMD_BEGIN@">python ${__tool_directory__}/UnMicst.py</token> 31 <token name="@VERSION_SUFFIX@">0</token>
32 <token name="@CMD_BEGIN@"><![CDATA[
33 UNMICST_PATH='' &&
34 if [ -f '/app/unmicstWrapper.py' ]; then
35 export UNMICST_PATH='python /app/unmicstWrapper.py';
36 else
37 export UNMICST_PATH='unmicstWrapper.py';
38 fi &&
39 \$UNMICST_PATH
40 ]]></token>
28 </macros> 41 </macros>