Mercurial > repos > perssond > unmicst
diff macros.xml @ 1:74fe58ff55a5 draft default tip
planemo upload for repository https://github.com/HMS-IDAC/UnMicst commit e14f76a8803cab0013c6dbe809bc81d7667f2ab9
| author | goeckslab |
|---|---|
| date | Wed, 07 Sep 2022 23:10:14 +0000 |
| parents | 6bec4fef6b2e |
| children |
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--- a/macros.xml Fri Mar 12 00:17:29 2021 +0000 +++ b/macros.xml Wed Sep 07 23:10:14 2022 +0000 @@ -2,6 +2,8 @@ <macros> <xml name="requirements"> <requirements> + <container type="docker">labsyspharm/unmicst:@TOOL_VERSION@</container> + <!-- <requirement type="package" version="3.7">python</requirement> <requirement type="package" version="1.15.0">tensorflow</requirement> <requirement type="package" version="1.15.1">tensorflow-estimator</requirement> @@ -12,17 +14,28 @@ <requirement type="package" version="2020.7.24">tifffile</requirement> <requirement type="package" version="2019.7.2">czifile</requirement> <requirement type="package" version="3.2.3">nd2reader</requirement> + --> </requirements> </xml> <xml name="version_cmd"> - <version_command>echo @VERSION@</version_command> + <version_command>@CMD_BEGIN@ --help</version_command> </xml> <xml name="citations"> <citations> + <citation type="doi">10.1101/2021.04.02.438285</citation> </citations> </xml> - <token name="@VERSION@">3.1.1</token> - <token name="@CMD_BEGIN@">python ${__tool_directory__}/UnMicst.py</token> + <token name="@TOOL_VERSION@">2.7.1</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@CMD_BEGIN@"><![CDATA[ + UNMICST_PATH='' && + if [ -f '/app/unmicstWrapper.py' ]; then + export UNMICST_PATH='python /app/unmicstWrapper.py'; + else + export UNMICST_PATH='unmicstWrapper.py'; + fi && + \$UNMICST_PATH + ]]></token> </macros>