Mercurial > repos > perssond > unmicst
view toolbox/GPUselect.py @ 0:6bec4fef6b2e draft
"planemo upload for repository https://github.com/ohsu-comp-bio/unmicst commit 73e4cae15f2d7cdc86719e77470eb00af4b6ebb7-dirty"
author | perssond |
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date | Fri, 12 Mar 2021 00:17:29 +0000 |
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import subprocess, re import numpy as np def pick_gpu_lowest_memory(): output = subprocess.Popen("nvidia-smi", stdout=subprocess.PIPE, shell=True).communicate()[0] output=output.decode("ascii") gpu_output = output[output.find("Memory-Usage"):] # lines of the form # | 0 8734 C python 11705MiB | memory_regex = re.compile(r"[|]\s+?\D+?.+[ ](?P<gpu_memory>\d+)MiB /") rows = gpu_output.split("\n") result=[] for row in gpu_output.split("\n"): m = memory_regex.search(row) if not m: continue gpu_memory = int(m.group("gpu_memory")) result.append(gpu_memory) return np.argsort(result)[0]