Mercurial > repos > peterjc > align_back_trans
diff tools/align_back_trans/README.rst @ 4:c8469274d136 draft
v0.0.8 Using Biopython 1.67 from Tool Shed or Conda package
author | peterjc |
---|---|
date | Wed, 10 May 2017 12:05:28 -0400 |
parents | de803005027f |
children | 2c32e8a8990f |
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--- a/tools/align_back_trans/README.rst Wed Feb 01 06:55:27 2017 -0500 +++ b/tools/align_back_trans/README.rst Wed May 10 12:05:28 2017 -0400 @@ -1,7 +1,7 @@ Galaxy tool to back-translate a protein alignment to nucleotides ================================================================ -This tool is copyright 2012-2015 by Peter Cock, The James Hutton Institute +This tool is copyright 2012-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below (MIT licence). @@ -70,6 +70,15 @@ - Use ``format_source=...`` tag. - Planemo for Tool Shed upload (``.shed.yml``, internal change only). v0.0.7 - Minor Python code style improvements (internal change only). +v0.0.8 - Python coding style change to avoid lamba (internal change only). + - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. + - Added two recent NCBI genetic code tables, + + - Table 24, *Pterobranchia* Mitochondrial Code, + - Table 25, Candidate Division SR1 and *Gracilibacteria*. + + - Use ``<command detect_errors="aggressive">`` (internal change only). + - Single quote command line arguments (internal change only). ======= ====================================================================== @@ -86,17 +95,17 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/align_back_trans/ + $ planemo shed_update -t testtoolshed --check_diff tools/align_back_trans/ ... or:: - $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/align_back_trans/ + $ planemo shed_update -t toolshed --check_diff tools/align_back_trans/ ... To just build and check the tar ball, use:: - $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/align_back_trans/ + $ planemo shed_upload --tar_only tools/align_back_trans/ ... $ tar -tzf shed_upload.tar.gz test-data/demo_nucs.fasta