Mercurial > repos > peterjc > blast2go

comparison tool-data/blast2go.loc.sample @ 6:872cf247c899 draft

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Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
author peterjc
date Mon, 23 Sep 2013 05:50:58 -0400
parents e4419efbefad
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5:e4419efbefad 6:872cf247c899
4 # Column 1 - ID, string that Galaxy will save in its database 4 # Column 1 - ID, string that Galaxy will save in its database
5 # Column 2 - Human readable name, Galaxy will show this in the UI 5 # Column 2 - Human readable name, Galaxy will show this in the UI
6 # Column 3 - Filename, Galaxy will use this when calling the tool 6 # Column 3 - Filename, Galaxy will use this when calling the tool
7 # 7 #
8 # Probably the most important setting in the properties file is the 8 # Probably the most important setting in the properties file is the
9 # Blast2GO database to use. Currently b2g4pipe v2.3.5 ships with an 9 # Blast2GO database to use. Currently b2g4pipe v2.5 ships with an
10 # old configuration so consult http://blast2go.org for the latest 10 # old configuration so consult http://www.blast2go.com for the latest
11 # public database they host in Spain. We also strongly recommend 11 # public database they host in Spain (or find this by running the GUI
12 # version of Blast2GO via Java Web Start under the menu entry "Tools",
13 # "General Settings", "DataAccess setting"). We also strongly recommend
12 # configuring a local Blast2GO database. 14 # configuring a local Blast2GO database.
13 # 15 #
14 # The property filenames can be fullied qualified paths like 16 # The property filenames can be fully qualified paths like
15 # /opt/b2g4pipe/Spain_2012_August.properties or provided they are 17 # /opt/b2g4pipe/Spain_2012_August.properties or provided they are
16 # in the same folder as the Blast2GO JAR file, just the filename 18 # in the same folder as the Blast2GO JAR file, just the filename
17 # like Spain_2012_August.properties instead. This is intended to 19 # like Spain_2012_August.properties instead. This is intended to
18 # make migrating between versions of Blast2GO easier (as the 20 # make migrating between future versions of Blast2GO easier (as the
19 # property files change between versions), and simpler overall. 21 # property files change between versions), and simpler overall.
20 # 22 #
21 Local_2011_May Local database (May 2011) Local_2011_May.properties 23 #Local_2011_May Local database (May 2011) Local_2011_May.properties
22 Spain_2010_May Database in Spain (May 2010) Spain_2010_May.properties 24 #Spain_2010_May Database in Spain (May 2010) Spain_2010_May.properties
25 Spain_2012_August Database in Spain (August 2012) Spain_2012_August.properties
23 Spain_2011_June Database in Spain (June 2011) Spain_2011_June.properties 26 Spain_2011_June Database in Spain (June 2011) Spain_2011_June.properties
24 Spain_2012_August Database in Spain (August 2012) Spain_2012_August.properties 27 #default Default settings b2gPipe.properties