Mercurial > repos > peterjc > blast2go
diff tools/ncbi_blast_plus/blast2go.py @ 3:a5594772282c draft
Uploaded v0.0.4 with explicit dependency on 'blast_datatypes' for 'blastxml' format definition.
No functional changes.
| author | peterjc |
|---|---|
| date | Fri, 08 Feb 2013 10:33:50 -0500 |
| parents | 0f159cf346c8 |
| children |
line wrap: on
line diff
--- a/tools/ncbi_blast_plus/blast2go.py Tue Aug 02 09:20:52 2011 -0400 +++ b/tools/ncbi_blast_plus/blast2go.py Fri Feb 08 10:33:50 2013 -0500 @@ -6,9 +6,9 @@ * Blast2GO properties filename (settings file) * Output tabular filename -Sadly b2g4pipe v2.3.5 cannot cope with current style large BLAST XML -files (e.g. from BLAST 2.2.25+), so we have to reformat these to -avoid it crashing with a Java heap space OutOfMemoryError. +Sadly b2g4pipe (at least v2.3.5 to v2.5.0) cannot cope with current +style large BLAST XML files (e.g. from BLAST 2.2.25+), so we reformat +these to avoid it crashing with a Java heap space OutOfMemoryError. As part of this reformatting, we check for BLASTP or BLASTX output (otherwise raise an error), and print the query count.