Mercurial > repos > peterjc > blast2go

diff tools/ncbi_blast_plus/blast2go.xml @ 4:c8c04cd07ca0 draft

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Uploaded v0.0.5, quotes filenames in case they contain spaces.
author peterjc
date Wed, 20 Feb 2013 13:33:47 -0500
parents e88a3246520e
children
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--- a/tools/ncbi_blast_plus/blast2go.xml	Fri Feb 08 10:33:50 2013 -0500
+++ b/tools/ncbi_blast_plus/blast2go.xml	Wed Feb 20 13:33:47 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="blast2go" name="Blast2GO" version="0.0.3">
+<tool id="blast2go" name="Blast2GO" version="0.0.5">
     <description>Maps BLAST results to GO annotation terms</description>
     <command interpreter="python">
-        blast2go.py $xml ${prop.fields.path} $tab
+        blast2go.py "${xml}" "${prop.fields.path}" "${tab}"
     </command>
     <inputs>
         <param name="xml" type="data" format="blastxml" label="BLAST XML results" description="You must have run BLAST against a protein database such as the NCBI non-redundant (NR) database. Use BLASTX for nucleotide queries, BLASTP for protein queries." />