Mercurial > repos > peterjc > blastxml_to_top_descr

comparison tools/ncbi_blast_plus/blastxml_to_top_descr.txt @ 4:34a0adda2770 draft

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Uploaded v0.0.3 which includes the test files required for the unit tests.
author peterjc
date Wed, 20 Feb 2013 13:18:07 -0500
parents 60c2d6ce926d
children 662fea0fe6b2
comparison
equal deleted inserted replaced
3:60c2d6ce926d 4:34a0adda2770
48 ======= 48 =======
49 49
50 v0.0.1 - Initial version. 50 v0.0.1 - Initial version.
51 v0.0.2 - Since BLAST+ was moved out of the Galaxy core, now have a dependency 51 v0.0.2 - Since BLAST+ was moved out of the Galaxy core, now have a dependency
52 on the 'blast_datatypes' repository in the Tool Shed. 52 on the 'blast_datatypes' repository in the Tool Shed.
53 v0.0.3 - Include the test files required to run the unit tests
53 54
54 55
55 Developers 56 Developers
56 ========== 57 ==========
57 58
59 http://bitbucket.org/peterjc/galaxy-central/src/tools 60 http://bitbucket.org/peterjc/galaxy-central/src/tools
60 61
61 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use 62 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use
62 the following command from the Galaxy root folder: 63 the following command from the Galaxy root folder:
63 64
64 $ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/repository_dependencies.xml 65 $ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/repository_dependencies.xml test-data/blastp_four_human_vs_rhodopsin.xml test-data/blastp_four_human_vs_rhodopsin_top3.tabular
65 66
66 Check this worked: 67 Check this worked:
67 68
68 $ tar -tzf blastxml_to_top_descr.tar.gz 69 $ tar -tzf blastxml_to_top_descr.tar.gz
69 tools/ncbi_blast_plus/blastxml_to_top_descr.py 70 tools/ncbi_blast_plus/blastxml_to_top_descr.py
70 tools/ncbi_blast_plus/blastxml_to_top_descr.txt 71 tools/ncbi_blast_plus/blastxml_to_top_descr.txt
71 tools/ncbi_blast_plus/blastxml_to_top_descr.xml 72 tools/ncbi_blast_plus/blastxml_to_top_descr.xml
72 tools/ncbi_blast_plus/repository_dependencies.xml 73 tools/ncbi_blast_plus/repository_dependencies.xml
74 test-data/blastp_four_human_vs_rhodopsin.xml
75 test-data/blastp_four_human_vs_rhodopsin_top3.tabular
73 76
74 77
75 Licence (MIT/BSD style) 78 Licence (MIT/BSD style)
76 ======================= 79 =======================
77 80