Mercurial > repos > peterjc > blastxml_to_top_descr
comparison tools/ncbi_blast_plus/blastxml_to_top_descr.xml @ 7:a7add03a44fd draft
Uploaded v0.0.6, checks return code for error handling
author | peterjc |
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date | Wed, 17 Apr 2013 11:46:03 -0400 |
parents | 8a0771c5e236 |
children | a8ef75aab1f9 |
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6:8a0771c5e236 | 7:a7add03a44fd |
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1 <tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.5"> | 1 <tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.6"> |
2 <description>Make a table from BLAST XML</description> | 2 <description>Make a table from BLAST XML</description> |
3 <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command> | 3 <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command> |
4 <command interpreter="python"> | 4 <command interpreter="python"> |
5 blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN} | 5 blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN} |
6 </command> | 6 </command> |
7 <stdio> | |
8 <!-- Assume anything other than zero is an error --> | |
9 <exit_code range="1:" /> | |
10 <exit_code range=":-1" /> | |
11 </stdio> | |
7 <inputs> | 12 <inputs> |
8 <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> | 13 <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> |
9 <param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/> | 14 <param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/> |
10 </inputs> | 15 </inputs> |
11 <outputs> | 16 <outputs> |