# HG changeset patch
# User peterjc
# Date 1360321355 18000
# Node ID 44ecdccbe19d360465814a1105d9d264638a1be4
# Parent  dff89c7e4308eb109a46cf0fa2d942a9b076c00c
Uploaded v0.0.2a, fixed dependency declaration

diff -r dff89c7e4308 -r 44ecdccbe19d tools/ncbi_blast_plus/blastxml_to_top_descr.txt
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Fri Feb 08 06:00:11 2013 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Fri Feb 08 06:02:35 2013 -0500
@@ -61,7 +61,7 @@
 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder:
 
-$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/datatypes_conf.xml
+$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/tool_dependencies.xml
 
 Check this worked:
 
@@ -69,7 +69,7 @@
 tools/ncbi_blast_plus/blastxml_to_top_descr.py
 tools/ncbi_blast_plus/blastxml_to_top_descr.txt
 tools/ncbi_blast_plus/blastxml_to_top_descr.xml
-tools/ncbi_blast_plus/datatypes_conf.xml
+tools/ncbi_blast_plus/tool_dependencies.xml
 
 
 Licence (MIT/BSD style)
diff -r dff89c7e4308 -r 44ecdccbe19d tools/ncbi_blast_plus/datatypes_conf.xml
--- a/tools/ncbi_blast_plus/datatypes_conf.xml	Fri Feb 08 06:00:11 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,14 +0,0 @@
-<?xml version="1.0"?>
-<datatypes>
-    <datatype_files>
-        <datatype_file name="blast.py"/>
-    </datatype_files>
-    <registration>
-        <datatype extension="blastxml" type="galaxy.datatypes.blast:BlastXml" mimetype="application/xml" display_in_upload="true"/>
-        <datatype extension="blastdbn" type="galaxy.datatypes.blast:BlastNucDb" mimetype="text/html" display_in_upload="false"/>
-        <datatype extension="blastdbp" type="galaxy.datatypes.blast:BlastProtDb" mimetype="text/html" display_in_upload="false"/>
-    </registration>
-    <sniffers>
-        <sniffer type="galaxy.datatypes.blast:BlastXml"/>
-    </sniffers>
-</datatypes>
diff -r dff89c7e4308 -r 44ecdccbe19d tools/ncbi_blast_plus/tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/ncbi_blast_plus/tool_dependencies.xml	Fri Feb 08 06:02:35 2013 -0500
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="blast+" version="2.2.26+">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
+                <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+These links provide information for building the NCBI Blast+ package in most environments.
+
+System requirements
+http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
+        </readme>
+    </package>
+</tool_dependency>
+