# HG changeset patch
# User peterjc
# Date 1366213563 14400
# Node ID a7add03a44fd85f3e24cec376c22483945bf4c37
# Parent  8a0771c5e23618beeb000db7b202942da6cb41f2
Uploaded v0.0.6, checks return code for error handling

diff -r 8a0771c5e236 -r a7add03a44fd tools/ncbi_blast_plus/blastxml_to_top_descr.txt
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Wed Apr 17 10:53:58 2013 -0400
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Wed Apr 17 11:46:03 2013 -0400
@@ -20,7 +20,6 @@
 'blast_datatypes' dependency.
 
 
-
 Manual Installation
 ===================
 
@@ -53,6 +52,7 @@
 v0.0.3 - Include the test files required to run the unit tests
 v0.0.4 - Quote filenames in case they contain spaces (internal change)
 v0.0.5 - Include number of queries with BLAST matches in stdout (peek text)
+v0.0.6 - Check for errors via the script's return code (internal change)
 
 
 Developers
diff -r 8a0771c5e236 -r a7add03a44fd tools/ncbi_blast_plus/blastxml_to_top_descr.xml
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.xml	Wed Apr 17 10:53:58 2013 -0400
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.xml	Wed Apr 17 11:46:03 2013 -0400
@@ -1,9 +1,14 @@
-<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.5">
+<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.6">
     <description>Make a table from BLAST XML</description>
     <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command>
     <command interpreter="python">
       blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
     </command>
+    <stdio>
+        <!-- Assume anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+    </stdio>
     <inputs>
         <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> 
 	<param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/>