# HG changeset patch
# User peterjc
# Date 1360321211 18000
# Node ID dff89c7e4308eb109a46cf0fa2d942a9b076c00c
# Parent  075fe5424c32566174ac8a45dbd2103607c5fac4
Uploaded v0.0.2, declared dependency on blast_datatypes

diff -r 075fe5424c32 -r dff89c7e4308 tools/ncbi_blast_plus/blastxml_to_top_descr.txt
--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Thu Feb 07 14:56:18 2013 -0500
+++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.txt	Fri Feb 08 06:00:11 2013 -0500
@@ -1,7 +1,7 @@
 Galaxy tool to extract top BLAST hit descriptions from BLAST XML
 ================================================================
 
-This tool is copyright 2012 by Peter Cock, The James Hutton Institute
+This tool is copyright 2012-2013 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below.
 
@@ -9,12 +9,23 @@
 identifiers with description for the top matches (by default the top 3), and
 output these as a simple tabular file along with the query identifiers.
 
-There are no additional dependancies.
+This requires the 'blast_datatypes' repository from the Galaxy Tool Shed
+to provide the 'blastxml' file format definition.
+
+
+Automated Installation
+======================
+
+This should be straightforward, Galaxy should automatically install the
+'blast_datatypes' dependency.
+
 
 
 Manual Installation
 ===================
 
+If you haven't done so before, first install the 'blast_datatypes' repository.
+
 There are just two files to install (if doing this manually):
 
 * blastxml_to_top_descr.py (the Python script)
@@ -37,6 +48,8 @@
 =======
 
 v0.0.1 - Initial version.
+v0.0.2 - Since BLAST+ was moved out of the Galaxy core, now have a dependency
+         on the 'blast_datatypes' repository in the Tool Shed.
 
 
 Developers
@@ -48,7 +61,7 @@
 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use
 the following command from the Galaxy root folder:
 
-$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.*
+$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/datatypes_conf.xml
 
 Check this worked:
 
@@ -56,6 +69,8 @@
 tools/ncbi_blast_plus/blastxml_to_top_descr.py
 tools/ncbi_blast_plus/blastxml_to_top_descr.txt
 tools/ncbi_blast_plus/blastxml_to_top_descr.xml
+tools/ncbi_blast_plus/datatypes_conf.xml
+
 
 Licence (MIT/BSD style)
 =======================
diff -r 075fe5424c32 -r dff89c7e4308 tools/ncbi_blast_plus/datatypes_conf.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/ncbi_blast_plus/datatypes_conf.xml	Fri Feb 08 06:00:11 2013 -0500
@@ -0,0 +1,14 @@
+<?xml version="1.0"?>
+<datatypes>
+    <datatype_files>
+        <datatype_file name="blast.py"/>
+    </datatype_files>
+    <registration>
+        <datatype extension="blastxml" type="galaxy.datatypes.blast:BlastXml" mimetype="application/xml" display_in_upload="true"/>
+        <datatype extension="blastdbn" type="galaxy.datatypes.blast:BlastNucDb" mimetype="text/html" display_in_upload="false"/>
+        <datatype extension="blastdbp" type="galaxy.datatypes.blast:BlastProtDb" mimetype="text/html" display_in_upload="false"/>
+    </registration>
+    <sniffers>
+        <sniffer type="galaxy.datatypes.blast:BlastXml"/>
+    </sniffers>
+</datatypes>