Mercurial > repos > peterjc > blastxml_to_top_descr
changeset 3:60c2d6ce926d draft
Uploaded v0.0.2b, with repository_dependencies.xml this time.
| author | peterjc |
|---|---|
| date | Fri, 08 Feb 2013 06:05:33 -0500 |
| parents | 44ecdccbe19d |
| children | 34a0adda2770 |
| files | tools/ncbi_blast_plus/blastxml_to_top_descr.txt tools/ncbi_blast_plus/repository_dependencies.xml tools/ncbi_blast_plus/tool_dependencies.xml |
| diffstat | 3 files changed, 7 insertions(+), 23 deletions(-) [+] |
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--- a/tools/ncbi_blast_plus/blastxml_to_top_descr.txt Fri Feb 08 06:02:35 2013 -0500 +++ b/tools/ncbi_blast_plus/blastxml_to_top_descr.txt Fri Feb 08 06:05:33 2013 -0500 @@ -61,7 +61,7 @@ For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder: -$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/tool_dependencies.xml +$ tar -czf blastxml_to_top_descr.tar.gz tools/ncbi_blast_plus/blastxml_to_top_descr.* tools/ncbi_blast_plus/repository_dependencies.xml Check this worked: @@ -69,7 +69,7 @@ tools/ncbi_blast_plus/blastxml_to_top_descr.py tools/ncbi_blast_plus/blastxml_to_top_descr.txt tools/ncbi_blast_plus/blastxml_to_top_descr.xml -tools/ncbi_blast_plus/tool_dependencies.xml +tools/ncbi_blast_plus/repository_dependencies.xml Licence (MIT/BSD style)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/ncbi_blast_plus/repository_dependencies.xml Fri Feb 08 06:05:33 2013 -0500 @@ -0,0 +1,5 @@ +<?xml version="1.0"?> +<repositories description="This requires the BLAST datatype definitions (e.g. the BLAST XML format)."> +<!-- Revision 4:f9a7783ed7b6 on the main tool shed is v0.0.14 which added BLAST databases --> +<repository toolshed="http://toolshed.g2.bx.psu.edu" name="blast_datatypes" owner="devteam" changeset_revision="f9a7783ed7b6" /> +</repositories>
--- a/tools/ncbi_blast_plus/tool_dependencies.xml Fri Feb 08 06:02:35 2013 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,21 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="blast+" version="2.2.26+"> - <install version="1.0"> - <actions> - <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action> - <action type="shell_command">cd c++ && ./configure --prefix=$INSTALL_DIR && make && make install</action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - <readme> -These links provide information for building the NCBI Blast+ package in most environments. - -System requirements -http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download - </readme> - </package> -</tool_dependency> -