Mercurial > repos > peterjc > clc_assembly_cell
diff tools/clc_assembly_cell/README.rst @ 5:31a9169b6222 draft default tip
"Update all the pico_galaxy tools on main Tool Shed"
| author | peterjc |
|---|---|
| date | Fri, 16 Apr 2021 22:32:53 +0000 |
| parents | 46a667b5e19e |
| children |
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--- a/tools/clc_assembly_cell/README.rst Wed Feb 01 07:05:09 2017 -0500 +++ b/tools/clc_assembly_cell/README.rst Fri Apr 16 22:32:53 2021 +0000 @@ -95,6 +95,8 @@ calling ``clc_cas_to_sam`` in the CLC MApper wrapper. v0.0.6 - Update tool XML for optional vs required parameters. - Update URLs in documentation. +v0.0.7 - Use ``<command detect_errors="aggressive">`` (internal change only). + - Single quote command line arguments (internal change only). ======= ====================================================================== @@ -108,17 +110,17 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/clc_assembly_cell/ + $ planemo shed_update -t testtoolshed --check_diff tools/clc_assembly_cell/ ... or:: - $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/clc_assembly_cell/ + $ planemo shed_update -t toolshed --check_diff tools/clc_assembly_cell/ ... To just build and check the tar ball, use:: - $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/clc_assembly_cell/ + $ planemo shed_upload --tar_only tools/clc_assembly_cell/ ... $ tar -tzf shed_upload.tar.gz test-data/NC_010642.fna