Mercurial > repos > peterjc > clc_assembly_cell
diff tools/clc_assembly_cell/clc_assembler.xml @ 4:46a667b5e19e draft
v0.0.6 update optional/required parameters and URLS in docs
author | peterjc |
---|---|
date | Wed, 01 Feb 2017 07:05:09 -0500 |
parents | 139b6f0a0bb5 |
children | 31a9169b6222 |
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--- a/tools/clc_assembly_cell/clc_assembler.xml Wed May 11 06:49:58 2016 -0400 +++ b/tools/clc_assembly_cell/clc_assembler.xml Wed Feb 01 07:05:09 2017 -0500 @@ -1,4 +1,4 @@ -<tool id="clc_assembler" name="CLC assembler" version="0.0.4"> +<tool id="clc_assembler" name="CLC assembler" version="0.0.6"> <description>Assembles reads giving a FASTA file</description> <requirements> <requirement type="binary">clc_assembler</requirement> @@ -58,8 +58,8 @@ label="Minimum size of 'good' DNA templates in the library preparation" /> <param name="max_size" type="integer" optional="false" min="0" value="" label="Maximum size of 'good' DNA templates in the library preparation" /> - <param name="filename1" type="data" format="fastq,fasta" required="true" label="Read file one"/> - <param name="filename2" type="data" format="fastq,fasta" required="true" label="Read file two"/> + <param name="filename1" type="data" format="fastq,fasta" label="Read file one"/> + <param name="filename2" type="data" format="fastq,fasta" label="Read file two"/> </when> <when value="interleaved"> <param name="placement" type="select" label="Pairing type (segment placing)"> @@ -79,10 +79,10 @@ label="Minimum size of 'good' DNA templates in the library preparation" /> <param name="max_size" type="integer" optional="false" min="0" value="" label="Maximum size of 'good' DNA templates in the library preparation" /> - <param name="filename" type="data" format="fastq,fasta" required="true" label="Interleaved read file"/> + <param name="filename" type="data" format="fastq,fasta" label="Interleaved read file"/> </when> <when value="none"> - <param name="filenames" type="data" format="fastq,fasta" multiple="true" required="true" label="Read file(s)" + <param name="filenames" type="data" format="fastq,fasta" multiple="true" optional="false" label="Read file(s)" help="Multiple files allowed, for example several files of orphan reads." /> </when> </conditional> @@ -128,7 +128,7 @@ http://toolshed.g2.bx.psu.edu/view/peterjc/clc_assembly_cell CLC Assembly Cell, CLC bio (2008--2015) -http://www.clcbio.com/products/clc-assembly-cell/ +https://www.qiagenbioinformatics.com/products/clc-assembly-cell/ This wrapper is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/clc_assembly_cell @@ -138,7 +138,7 @@ @MISC{clcbio, AUTHOR = {CLC Bio} title ={{CLC Assembly Cell}}, -url = {http://www.clcbio.com/products/clc-assembly-cell/}, +url = {https://www.qiagenbioinformatics.com/products/clc-assembly-cell/}, year = {2008--2015} } </citation>