Mercurial > repos > peterjc > clc_assembly_cell
diff tools/clc_assembly_cell/clc_assembler.xml @ 5:31a9169b6222 draft default tip
"Update all the pico_galaxy tools on main Tool Shed"
| author | peterjc |
|---|---|
| date | Fri, 16 Apr 2021 22:32:53 +0000 |
| parents | 46a667b5e19e |
| children |
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--- a/tools/clc_assembly_cell/clc_assembler.xml Wed Feb 01 07:05:09 2017 -0500 +++ b/tools/clc_assembly_cell/clc_assembler.xml Fri Apr 16 22:32:53 2021 +0000 @@ -1,15 +1,10 @@ -<tool id="clc_assembler" name="CLC assembler" version="0.0.6"> +<tool id="clc_assembler" name="CLC assembler" version="0.0.7"> <description>Assembles reads giving a FASTA file</description> - <requirements> - <requirement type="binary">clc_assembler</requirement> - </requirements> - <stdio> - <!-- Assume anything other than zero is an error --> - <exit_code range="1:" /> - <exit_code range=":-1" /> - </stdio> - <version_command>${CLC_ASSEMBLY_CELL:-/mnt/apps/clcBio/clc-assembly-cell-4.1.0-linux_64/}clc_assembler | grep -i version</version_command> - <command>\${CLC_ASSEMBLY_CELL:-/mnt/apps/clcBio/clc-assembly-cell-4.1.0-linux_64/}clc_assembler + <version_command> +${CLC_ASSEMBLY_CELL:-/mnt/apps/clcBio/clc-assembly-cell-4.1.0-linux_64/}clc_assembler | grep -i version + </version_command> + <command detect_errors="aggressive"> +\${CLC_ASSEMBLY_CELL:-/mnt/apps/clcBio/clc-assembly-cell-4.1.0-linux_64/}clc_assembler #for $rg in $read_group ##-------------------------------------- #if str($rg.segments.type) == "paired"