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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="clinod" version="1.3">
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4 <install version="1.0">
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5 <actions>
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6 <!-- Set environment variable $CLINOD so wrapper knows where to look -->
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7 <action type="set_environment">
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8 <environment_variable name="CLINOD" action="set_to">$INSTALL_DIR</environment_variable>
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9 </action>
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10 <!-- clinod requires the SNNS Batch Interpreter v1.0 executable -->
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11 <action type="shell_command">wget http://www.ra.cs.uni-tuebingen.de/downloads/SNNS/SNNSv4.3.tar.gz</action>
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12 <action type="shell_command">tar -zxvf SNNSv4.3.tar.gz</action>
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13 <action type="move_file"><source>SNNSv4.3/tools/bin/x86_64-pc-unknown-linux-gnuoldld/batchman</source><destination>$INSTALL_DIR/</destination></action>
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14 <!-- clinod itself is just a JAR file -->
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15 <action type="shell_command">wget http://www.compbio.dundee.ac.uk/nod/downloads/clinod-1.3.jar</action>
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16 <!-- Don't need to move it, $INSTALL_DIR is the current directory
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17 <action type="move_file"><source>clinod-1.3.jar</source><destination>$INSTALL_DIR</destination></action>
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18 -->
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19 </actions>
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20 </install>
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21 <readme>
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22 Downloads and installs the command line NoD (clinod) JAR file and the binary
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23 dependency batchman, and sets $CLINOD to the folder used.
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24
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25 We could download, compiles and install the SNNS Batch Interpreter v1.0 executable
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26 (batchman) from Stuttgart Neural Network Simulator (SNNS) v4.2. However, we simplify
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27 this by downloading SNNS v4.3 which includes the precompiled copy of batch man.
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28
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29 For more details, see:
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30 http://www.compbio.dundee.ac.uk/www-nod/downloads.jsp
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31 </readme>
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32 </package>
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33 </tool_dependency>
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34
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