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comparison tools/clinod/README.rst @ 7:f61366a4a14e draft

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v0.0.10 Internal changes to command line handling
author peterjc
date Tue, 16 May 2017 08:50:43 -0400
parents 77cfe958b5ea
children 4863b1dbe8f0
comparison
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6:77cfe958b5ea 7:f61366a4a14e
71 v0.0.7 - Use the new ``$GALAXY_SLOTS`` environment variable for thread count. 71 v0.0.7 - Use the new ``$GALAXY_SLOTS`` environment variable for thread count.
72 - Tool definition now embeds citation information. 72 - Tool definition now embeds citation information.
73 v0.0.8 - Reorder XML elements (internal change only). 73 v0.0.8 - Reorder XML elements (internal change only).
74 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). 74 - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
75 v0.0.9 - Explicitly record clinod version via ``<version_command>``. 75 v0.0.9 - Explicitly record clinod version via ``<version_command>``.
76 v0.0.10 - Use ``<command detect_errors="aggressive">`` (internal change only).
77 - Single quote command line arguments (internal change only).
76 ======= ====================================================================== 78 ======= ======================================================================
77 79
78 80
79 Developers 81 Developers
80 ========== 82 ==========
87 89
88 For pushing a release to the test or main "Galaxy Tool Shed", use the following 90 For pushing a release to the test or main "Galaxy Tool Shed", use the following
89 Planemo commands (which requires you have set your Tool Shed access details in 91 Planemo commands (which requires you have set your Tool Shed access details in
90 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: 92 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
91 93
92 $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/clinod/ 94 $ planemo shed_update -t testtoolshed --check_diff tools/clinod/
93 ... 95 ...
94 96
95 or:: 97 or::
96 98
97 $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/clinod/ 99 $ planemo shed_update -t toolshed --check_diff tools/clinod/
98 ... 100 ...
99 101
100 To just build and check the tar ball, use:: 102 To just build and check the tar ball, use::
101 103
102 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/clinod/ 104 $ planemo shed_upload --tar_only tools/clinod/
103 ... 105 ...
104 $ tar -tzf shed_upload.tar.gz 106 $ tar -tzf shed_upload.tar.gz
105 test-data/four_human_proteins.fasta 107 test-data/four_human_proteins.fasta
106 test-data/four_human_proteins.clinod-1.3.tabular 108 test-data/four_human_proteins.clinod-1.3.tabular
107 tools/clinod/README.rst 109 tools/clinod/README.rst