Mercurial > repos > peterjc > clinod
diff tools/clinod/README.rst @ 5:9485cdfca57e draft
v0.0.8 internal changes
author | peterjc |
---|---|
date | Wed, 05 Aug 2015 10:58:54 -0400 |
parents | 4d9a4a43861b |
children | 77cfe958b5ea |
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--- a/tools/clinod/README.rst Thu Nov 20 06:15:49 2014 -0500 +++ b/tools/clinod/README.rst Wed Aug 05 10:58:54 2015 -0400 @@ -1,7 +1,7 @@ Galaxy wrapper for Command line NoD predictor (v1.3) ==================================================== -This wrapper is copyright 2011-2013 by Peter Cock, The James Hutton Institute +This wrapper is copyright 2011-2015 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. @@ -70,6 +70,8 @@ - Development moved to GitHub, https://github.com/peterjc/pico_galaxy v0.0.7 - Use the new ``$GALAXY_SLOTS`` environment variable for thread count. - Tool definition now embeds citation information. +v0.0.8 - Reorder XML elements (internal change only). + - Planemo for Tool Shed upload (``.shed.yml``, internal change only). ======= ====================================================================== @@ -82,19 +84,28 @@ Development has now moved to a dedicated GitHub repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/clinod -For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use -the following command from the Galaxy root folder:: +For pushing a release to the test or main "Galaxy Tool Shed", use the following +Planemo commands (which requires you have set your Tool Shed access details in +``~/.planemo.yml`` and that you have access rights on the Tool Shed):: + + $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/clinod/ + ... + +or:: - $ tar -czf clinod.tar.gz tools/clinod/README.rst tools/clinod/clinod.xml tools/clinod/tool_dependencies.xml test-data/four_human_proteins.fasta test-data/four_human_proteins.clinod-1.3.tabular + $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/clinod/ + ... + +To just build and check the tar ball, use:: -Check this worked:: - - $ tar -tzf clinod.tar.gz + $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/clinod/ + ... + $ tar -tzf shed_upload.tar.gz + test-data/four_human_proteins.fasta + test-data/four_human_proteins.clinod-1.3.tabular tools/clinod/README.rst tools/clinod/clinod.xml tools/clinod/tool_dependencies.xml - test-data/four_human_proteins.fasta - test-data/four_human_proteins.clinod-1.3.tabular Licence (MIT)